Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04403 ATGGCATCTCTTATAATTTTCATACTCTTATCTTTCCCTATATTCCTCTTCCTCCTCAACCGCCATAAAAAAATCTCGGCCGCCAAGCGCCGCCTTCCACCGGGACCACAGGGATGGCCCATATTTGGAAACATGTTCCAATTAGGAGAAATGCCTCACCGCACACTCACAAATTTAAGAGAAAAATATGGTCCAATTTTATGGCTCAAAATTGGTTCTATAAACACTATGGCAATACTCTCAGCCAAAGAAGCTACAACATTTTTCAAAAACCATGACCAAAATTTTTCGGACCGAACCGTAATCGAAACCATGCGTGTCCATAACTACGACAAATCTTCTCTAGCTTTGGCTCCTTACGGCCCTTATTGGCGGCTCATGCGCCGGCTTGTAACGGTCGATATGTTAGTTATGAAACGCATAAACGACACCGTTTTGGTTCGTCGTAAATGCGTAAATGATATGCTGACGTGGATTAACAAAGAAGCATGTGAGTTGGAAAATGGTCGTGGACTTCATGTTTCACGTTTTATTTTCTTCATGAGTTTTAACTTGTTTGGGAATTTAATGTTGTCACGTGATTTATTCAATATGGAATCTGAGAATAGGTCTGAATTTTTTGATGCTGTTATGGGGATGATGGAGTGGACCGGACATGCTAATGTGTCTGATTTGTTTCCTTGGTTGAGGTGGTTGGACCCACAAGGACTAAGGAGAAAAATGGATAGGGATATGGGAAAAGCGATTAAATTTGCTTCCACGTTTGTGAAAGAGCGTTTGGATCAATTGGAGGTGGAACGTGATGGTGAGAAATCAAGGGATTTCTTGGATGTCTTACTTGATTTCCAAAAAAATGAGAACCGAGAAGCAGCTAAGATCTCAGATAAAGATCTCAACATTTTGATCTTGGAAATGTTTCTAGCTGGGGCAGAAACAACGAGCAGCACAATTGAATGGGCTATGACGGAGCTTTTAATCAACCGTGATTGTATGTCGAAAGTTAAAATAGAGCTTAATTCGGTTGTTGGGGAAAAAGATGTTGAAGAGAGTGACATAGACAAACTTCCTTATTTACAAGGTGTTGTTAAGGAAACATTAAGGTTACATCCTCCAATTCCACTACTTGTCCCACGAAAAGCAATACAAGACACAGAATTTATGGGATACTTCATACCGAAAGACACGCAAGTTTTTGTGAATACGTGGGCAATTGGAAGAGATCCAGATGCTTGGGATGAACCATTGGATTTTAAACCTGAGAGGTTTTGTGATTTTAATAATAAGAGTTACGAGACTGATTATAAAGGACAACATTACGAGTTTATACCATTTGGAGCTGGAAGAAGAATGTGTGCCGGTGTGCCTTTGGCACATAGAATTCTTCACCTTGTTTTGGGATCTTTGATTCATCGATTTGATTGGGAGCTTGATTGCAATGTTACACCTTTAACTATGGACATGAGAGATAATCTTGGGATTACCATGAGAAAGTTTGAACCATTGCTTGCTGTGCCCAAATTAGTTGTTGGTTCTTAG 1536 0.3997 MASLIIFILLSFPIFLFLLNRHKKISAAKRRLPPGPQGWPIFGNMFQLGEMPHRTLTNLREKYGPILWLKIGSINTMAILSAKEATTFFKNHDQNFSDRTVIETMRVHNYDKSSLALAPYGPYWRLMRRLVTVDMLVMKRINDTVLVRRKCVNDMLTWINKEACELENGRGLHVSRFIFFMSFNLFGNLMLSRDLFNMESENRSEFFDAVMGMMEWTGHANVSDLFPWLRWLDPQGLRRKMDRDMGKAIKFASTFVKERLDQLEVERDGEKSRDFLDVLLDFQKNENREAAKISDKDLNILILEMFLAGAETTSSTIEWAMTELLINRDCMSKVKIELNSVVGEKDVEESDIDKLPYLQGVVKETLRLHPPIPLLVPRKAIQDTEFMGYFIPKDTQVFVNTWAIGRDPDAWDEPLDFKPERFCDFNNKSYETDYKGQHYEFIPFGAGRRMCAGVPLAHRILHLVLGSLIHRFDWELDCNVTPLTMDMRDNLGITMRKFEPLLAVPKLVVGS 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04403 511 SUPERFAMILY Cytochrome P450 33 504 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g04403 511 PRINTS P450 superfamily signature 451 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g04403 511 PRINTS P450 superfamily signature 442 451 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g04403 511 PRINTS P450 superfamily signature 308 325 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g04403 511 PRINTS P450 superfamily signature 360 371 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g04403 511 Gene3D Cytochrome P450 17 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g04403 511 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 9 506 - -
Trre13g04403 511 FunFam Cytochrome P450 76C4 24 504 - -
Trre13g04403 511 Pfam Cytochrome P450 33 493 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g04403 511 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 444 453 IPR017972 GO:0005506|GO:0016705
Trre13g04403 511 CDD CYP76-like 60 505 - -
Trre13g04403 511 PRINTS E-class P450 group I signature 297 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g04403 511 PRINTS E-class P450 group I signature 441 451 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g04403 511 PRINTS E-class P450 group I signature 451 474 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g04403 511 PRINTS E-class P450 group I signature 60 79 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g04403 511 PRINTS E-class P450 group I signature 359 377 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g04403 511 PRINTS E-class P450 group I signature 400 424 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g04403 511 PRINTS E-class P450 group I signature 317 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04403 Trre-Chr13 51603060 51605222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04403 28 505 Cytochrome P450 AT3G52970 44.289 1.75e-140 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04403 K22983 - gmx:100785241 810.061