Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04402 ATGAACACAAAAACACTAGCATTAGCCTTAACCTTAGTATTTCTCTCCACATCATTAACAGAAAGTGCACAACAAAATGATACACATGCCCTAACTGAATTCCGTCTCCAGACGGACTTCCACGGCTACCTCGTCAGTAATTGGACTGGCGAGGACGCCTGCAATGCCGCATGGCGTGGTGTTGAATGCTCCCCGAACGGTAGAGTAGTAGCTCTCTCCATCCCTTCCCTAAATCTCCGTGGTCCCGTTGATTCTCTCTCGACGCTAATCTACTTACGCTTCCTTGACCTACACGATAACCGGTTAAACGGAACCATTGTTCCTCTTTTAAACTGCACTGATCTTGAACTTCTCTATCTTTCAGGCAACGACTTCTCCGGCGAGATACCGCCGGAGATATCATCATTACGGTTTCTTATCAGACTTGACATTTCTGATAACAACATCCACGGTAAAATTCCTAAAGAAATTTCAAAATTGCATCATCTCCTCACTCTCCGGTTACAGAACAACGAACTCTCCGGCGAAGTTCCCGATCTTTCTTCTTCCCTTAACAATCTCAGAGAACTCAATATCACTAACAATGAACTCCAAGGACACATACCAGACGCTATGGTTACTAAATTCGGCAACAAAAGCTTCTCCGGCAACGACGGTCTTTGCGGATCGAGTCCGTTACCGAATTGTTCCATCACCGGATCTCATCCTCCTTCCGATGATGCTGGTTCTGAAATTGTTCCTTCAAACCCTAGTTCAATCCCAAAATCTAGCAATAGTACTCACGGTATAATTCCATCTGAAACTCCTAGAAAACGGAAAATGTTGAGTCCGGGAGTAATTGTGGCGGTTGCGGTGGCGGTTTCCGTGGTTTTACTGATGGCGGTTTCTTTCACGGTGGCGCAATGTTGCGGAAGAGGAAGATCTAATTCAACGGTTGGGATGGATAGTGAAATTGGGAAAAGAAAAAGTGATAGTAGCAGTGGAAGCGAGAAAAAAGGGTACCGTGGAAATAGTAATAATGGGGGTGTAGATAGAGATAGTGATGGAACAATAACTGAAACAGAGAGAAGTAAATTAGTGTTTTTTGATAGAAGGAATGAGTTTGAGTTAGAGGATTTGTTAAGAGCTTCAGCAGAGATGCTTGGGAAGGGTAGTTTGGGAACTGTTTATAGGGCTATTCTTGATGATGGGTGTACTGTTGCTGTTAAGAGACTTAAGGATGCTAACCCTTGTGATAGGAACCAATTTGAACAGTATATGGATGTTGTGGGGAAGCTTAGACACCCTAATGTTGCTAGACTTAAAGCTTATTATTATGCTAAGGAAGAAAAGCTTTTGGTTTATGATTATCTTTCCAATGGAAGCTTGCATGCTCTTCTTCATGGGAACCGTGGTCCGGGAAGGATTCCATTGGATTGGACAACAAGAATAAGCTTGGTGTTAGGGGCAGCAAGAGGTCTAGCAAGGATTCATGGAGAGTATAGTGCAGCCAAGATACCTCATGGGAATGTGAAATCATCCAATGTATTACTTGACAAGAATGGGGTTGCTTGCATAGGTGACTTTGGTTTGTCGCTATTGTTGAACCCTGCTCACGCCGTTGCGAGGTTGGGTGGGTACAGAGCTCCAGAACAGGCGGAAGCGAAGAAGCTCTCACAAGAGGCAGATGTGTATGCTTTTGGGGTTTTGGTATTGGAAGTTTTGACAGGAAGAGCCCCTTCCTCCTCTCAGTATTCTTCTCCTGTAGGAGTTCGCCCTTGTGTGACGTTCGAGGAACAAGAAGCAGATCTTCCAAAATGGGTTCGGTCAATTGTGAAGGAAGAGTGGACATCAGAGGTGTTTGATCAAGAACTTTTGAGGTACAAGAATATTGAGGAGGAGCTTGTTTCAATGCTGAATGTGGGATTAGCTTGTGTTGTGTTACAGCCTGAGAAAAGGCCAACTATGTTGCAAGTTGTTAAGATGATTGAGGATATTAGGGTTGAACAATCTCCTCTAAGAGAGGATTATGATGAATCGCGCAATTCACTTTCACCATCACTTGCAACTACTGAAGATTGCCTAGCTTAA 2070 0.4386 MNTKTLALALTLVFLSTSLTESAQQNDTHALTEFRLQTDFHGYLVSNWTGEDACNAAWRGVECSPNGRVVALSIPSLNLRGPVDSLSTLIYLRFLDLHDNRLNGTIVPLLNCTDLELLYLSGNDFSGEIPPEISSLRFLIRLDISDNNIHGKIPKEISKLHHLLTLRLQNNELSGEVPDLSSSLNNLRELNITNNELQGHIPDAMVTKFGNKSFSGNDGLCGSSPLPNCSITGSHPPSDDAGSEIVPSNPSSIPKSSNSTHGIIPSETPRKRKMLSPGVIVAVAVAVSVVLLMAVSFTVAQCCGRGRSNSTVGMDSEIGKRKSDSSSGSEKKGYRGNSNNGGVDRDSDGTITETERSKLVFFDRRNEFELEDLLRASAEMLGKGSLGTVYRAILDDGCTVAVKRLKDANPCDRNQFEQYMDVVGKLRHPNVARLKAYYYAKEEKLLVYDYLSNGSLHALLHGNRGPGRIPLDWTTRISLVLGAARGLARIHGEYSAAKIPHGNVKSSNVLLDKNGVACIGDFGLSLLLNPAHAVARLGGYRAPEQAEAKKLSQEADVYAFGVLVLEVLTGRAPSSSQYSSPVGVRPCVTFEEQEADLPKWVRSIVKEEWTSEVFDQELLRYKNIEEELVSMLNVGLACVVLQPEKRPTMLQVVKMIEDIRVEQSPLREDYDESRNSLSPSLATTEDCLA 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04402 689 MobiDBLite consensus disorder prediction 228 270 - -
Trre13g04402 689 Gene3D Phosphorylase Kinase; domain 1 346 450 - -
Trre13g04402 689 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 12 661 IPR046959 -
Trre13g04402 689 MobiDBLite consensus disorder prediction 667 689 - -
Trre13g04402 689 FunFam pollen receptor-like kinase 1 345 450 - -
Trre13g04402 689 Gene3D Ribonuclease Inhibitor 110 231 IPR032675 -
Trre13g04402 689 Pfam Protein kinase domain 379 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04402 689 MobiDBLite consensus disorder prediction 330 347 - -
Trre13g04402 689 MobiDBLite consensus disorder prediction 244 265 - -
Trre13g04402 689 MobiDBLite consensus disorder prediction 310 349 - -
Trre13g04402 689 ProSiteProfiles Protein kinase domain profile. 375 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04402 689 Gene3D Ribonuclease Inhibitor 24 109 IPR032675 -
Trre13g04402 689 SUPERFAMILY Protein kinase-like (PK-like) 379 656 IPR011009 -
Trre13g04402 689 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 107 229 - -
Trre13g04402 689 Gene3D Transferase(Phosphotransferase) domain 1 451 680 - -
Trre13g04402 689 SUPERFAMILY L domain-like 25 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04402 Trre-Chr13 51594632 51597303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04402 25 685 Receptor kinase-like Gene Family AT2G36570 63.922 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre13g04402 Pkinase 4.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04402 - - gmx:100808402 966.066