Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04398 ATGGAATCCAATGGAATATTTCCTACCATTAATAATGGATTTCTAGGAGTAGAAAACCCTTCAAAACAACAACAACAAAACCTTCAAAATCAACAAAATCCTCACACTTTACAACATCACCAAATGGTTTCCTATGATCAACAACCTCATCAATCAATCAAACAAGGCTACCCTTATTCATCAAAAACCAACAACATCAACAACAAACCACAACAACAAATCAACCTTAGCGACGAAGACGAACCATGTTTCGGAGCAGATGAAACCTCTATTGGTGACCCAAAAAGAAAAGGATCACCATGGCATAGAATGAAATGGACAGATACAATGGTAAGACTCTTAATAATGGCTGTTTATTACATTGGTGATGAAGCTGGTACTTCAGAGTTAGGAATAGGCACTGATAATAAAAAGAAAACCAATGGTTTGTTACAAAAGAAAGGTAAATGGAAATCAGTTTCTAAAGGAATGATGGAAAAAGGTTATTATGTTTCACCTCAACAATGTGAAGATAAGTTCAATGATTTGAACAAAAGATACAAAAGGGTGAATGATATTCTTGGTAAAGGAACAGCTTGTAGAGTTGTTGAAAATCAAAGTTTGATGGATACTATGGATTTGTCTATAAAATTGAAAGATGAAGCTAGAAAGCTTTTGAATTCAAAGCATCTTTTCTTTAGAGAAATGTGTGCTTATCATAATAGTTGTGGTCATGTAAACAACAATAATAACAATTTGCAACAACAATCTTCAAATGAGACACAACCACAACATCAACATCAACAACAGCAGCAACAAAACCAACAACAACAATGTTTACATTCATCAAATGGGGTAGGAATGTTGAAGTTGAAAGGAAAAAGTGGTGAAGAGGAAGAAGATGAAGATGAAGAAGATGAATGGGAAGATGAATCTGAAGAGGAAGAAGAAGAATCAGGAGAAGGTGGTTGTTATGGATCAAAGGGTAATGAAGAAGATGAGAATATTAATATTAATATTGATCATCATTTGAGGAAAAAATCAAAGAAAGTTTCATCACAAGTTATGCAACAGTTGAGTAGTGAAGTGATGAATGTGTTGCAAGATGGTGTGAAGAGTAGTTGGGAGAAAAAACAATGGATGAAGAAAAGGGTGGTGCAATTAGCAGAAGAACAAATAAACTATCATGTTGAAGCATTTGAGATTGAAAAACAAAGGTTAAAATGGGCAAAGTTTAGTGGTAATAAAGAAAGGGAAATGGAGAAAAATAAACTTGAAAATGAAAGGAGGAGTTTGGAAATTGATAGAATGGTTTTGTTGCTTAGACAGAAGGAGCTTGAGTTGCAGAATACTCAGCAGATGCAACAGCAACAACATTCTTCTACTTAG 1368 0.3414 MESNGIFPTINNGFLGVENPSKQQQQNLQNQQNPHTLQHHQMVSYDQQPHQSIKQGYPYSSKTNNINNKPQQQINLSDEDEPCFGADETSIGDPKRKGSPWHRMKWTDTMVRLLIMAVYYIGDEAGTSELGIGTDNKKKTNGLLQKKGKWKSVSKGMMEKGYYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQSLMDTMDLSIKLKDEARKLLNSKHLFFREMCAYHNSCGHVNNNNNNLQQQSSNETQPQHQHQQQQQQNQQQQCLHSSNGVGMLKLKGKSGEEEEDEDEEDEWEDESEEEEEESGEGGCYGSKGNEEDENININIDHHLRKKSKKVSSQVMQQLSSEVMNVLQDGVKSSWEKKQWMKKRVVQLAEEQINYHVEAFEIEKQRLKWAKFSGNKEREMEKNKLENERRSLEIDRMVLLLRQKELELQNTQQMQQQQHSST 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04398 455 Coils Coil 408 435 - -
Trre13g04398 455 Gene3D - 106 182 - -
Trre13g04398 455 MobiDBLite consensus disorder prediction 291 313 - -
Trre13g04398 455 PANTHER F16F4.11 PROTEIN-RELATED 6 445 - -
Trre13g04398 455 Coils Coil 291 311 - -
Trre13g04398 455 MobiDBLite consensus disorder prediction 241 326 - -
Trre13g04398 455 MobiDBLite consensus disorder prediction 1 78 - -
Trre13g04398 455 MobiDBLite consensus disorder prediction 241 277 - -
Trre13g04398 455 MobiDBLite consensus disorder prediction 1 99 - -
Trre13g04398 455 Pfam Myb/SANT-like DNA-binding domain 103 231 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04398 Trre-Chr13 51556324 51557691 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre13g04398 Myb_DNA-bind_4 6.6e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04398 - - gmx:547619 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04398 13 51556324 51557691 Trre13g04398 13 51556324 51557691 ECH
Trre13g04398 13 51556324 51557691 Trre1g02470 1 20003892 20005430 PCT