Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04380 ATGGATTGGAATATTGAGAACACAAGACCCTTTGTTCCTCATGCAGAATCTTCCTTAAGCTTCTTCTACAACTATAACAATACCCCTTATTCAGGAATGGATGTGAGTCAAGTAGCAATGGGTGAGACACAACAAAGGTTGCTTCCAGAAATGGATGAAATGAACATCAATGGAAATAATTACAAAGAGAAGAAAAAGAGATTAACAAGTAATCAGATTGATTTACTTGAGAGGAGTTTCCAAGAGGAAATAAAATTAGATCCTGAAAGGAAGATAAAGCTTTCAAGAGAGCTAGGGCTTCAACCTCGCCAAATTGCTGTTTGGTTCCAAAATAGGCGTACAAGGTGGAAAGCTAAGCACCTTGAACACTTGTATGATGTGCTTAAACAAGAATTTGATATTGTCTCCAAAGAAAAGCAGAAACTTCAAGAAGAGGTTATGAAGTTGAAGGGAAAGCTAAAAGAACAAAGTAATAATTTTAGGACACAACAAACATTTGTTGAAGAAACAGTAGAAAGCACATCAAAAGGACTAAGATGTTCAAACAAACCACAAGGTGGAACTGTAGAGAATTACACCAACAACAACAACAACAATAGTACTTGTTTCACAGTTGAAGATTTTAATAACCCTGTTTCAATGCCTCCTCAACAATGTCACTGGCCTGTTTTACCTAATTATTATCCCTAA 690 0.3594 MDWNIENTRPFVPHAESSLSFFYNYNNTPYSGMDVSQVAMGETQQRLLPEMDEMNINGNNYKEKKKRLTSNQIDLLERSFQEEIKLDPERKIKLSRELGLQPRQIAVWFQNRRTRWKAKHLEHLYDVLKQEFDIVSKEKQKLQEEVMKLKGKLKEQSNNFRTQQTFVEETVESTSKGLRCSNKPQGGTVENYTNNNNNNSTCFTVEDFNNPVSMPPQQCHWPVLPNYYP 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04380 229 Pfam Homeobox associated leucine zipper 119 153 IPR003106 GO:0006355|GO:0043565
Trre13g04380 229 Gene3D - 56 124 - -
Trre13g04380 229 FunFam Putative homeobox-leucine zipper protein ATHB-51 61 124 - -
Trre13g04380 229 Pfam Homeodomain 62 117 IPR001356 GO:0003677
Trre13g04380 229 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Trre13g04380 229 CDD homeodomain 62 120 IPR001356 GO:0003677
Trre13g04380 229 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 54 193 IPR045224 GO:0003700
Trre13g04380 229 Coils Coil 51 71 - -
Trre13g04380 229 SMART HOX_1 62 123 IPR001356 GO:0003677
Trre13g04380 229 Coils Coil 125 159 - -
Trre13g04380 229 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Trre13g04380 229 SUPERFAMILY Homeodomain-like 50 119 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04380 Trre-Chr13 51443444 51445258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04380 1 149 Homeobox Transcription Factor Family AT5G03790 53.939 3.87e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre13g04380 Homeodomain 2.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04380 - - ccaj:109798071 249.21