Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04379 ATGATTGTTGAATCAAACAGGAGCTGTTTTAGATATGCCTTTCTTCTTTGCCTTTTGTTTTGCCATTATACTTGTTCACAAAAGACTTGTCCAAACTGCGGCTCTATGAAAGTTCCGTATCCTTTGAGTACAGAACAAAGCTGTGGCGATCCATTCTATAGGCTTCGATGTGATCCTCATTCTCAAAAGCTTTACTTTGACACTCTCAATGGTAGTTCCTATGTTGTACTCAGAATCATGTCTTCGATCCAGCGCATGGTGTTGCAGTCATCACCTTGGTTACCTAGTTCATGTGTCACACAAGACATGCCGGTAAGCAACGGTATTTGGTTAAATCAGTCACTTCCTTTCAACATAACTTCATCCAACACAGTGTTCCTCTTCAACTGTTCTCCTCGCCTCTTGGTTTCTCCTCTTAACTGCACTTCTTCTAGTATTTGTCATCGTTACTTGGAAAATTCAGGTCATGTCGACAAAAATCGAGCAGTCAAGTGTGCAAGTGGTCTTCACCCTTGTTGCACTTTTGTTGCTGGTGGTATGCCTTCAGCTTACAAGATTCGTCTTCATAGTTCCGGTTGCAAAGCATTCAGAAGCATCCTTCATTTGGACCAAGACAAACCTCCTAATCAGTGGGAGGAAGGCCTAGAGATTCAATGGTCTCTTCCATCTGAACCTGTATGCCGGACACAAAGTGATTGTTCTAGAGACTCTAAGTGTTCGCCTTCTAGTCGAGACACACTCTTTCGCTGTCTTTGTAATAGAGGATTCCATTGGGAACCTTTTGCAGCAACCTGTGTAAGGTACAAGAGAAAATCCAAATGGAAAACCAGCTTGGTTGTCTCAATAGTTGTTATTGCTTTTTTCTCATTGGCCGTGGTTCTTGTCATCGTCACAAAATCCTTCAAACACCGGGAGAAGCAGGCCAAGGAAAGAGAAATTGTACTGAAATCAAACACTGGTGGAGAGAAACCTTACAAAACTTTTCAACTGAAAGAGTTGAAAAAAGCAACAAAATGTTTTTCTCAAGATAGGATCTTAGGAAGTGGTGGATTTGGAGAAGTTTACAAAGGTGAACTACAAAATGGAACAATTGTAGCTGTCAAAAAAGCTAGAGTTGGTAACCTCAAAAGCACTCAACAAGTGCTTAATGAGGTTTCAATACTTTCTCAAGTCAATCACAAGAACCTAGTCAGACTCTTAGGCTGCTGTGTGGAATCTGAACAACCATTGATGATCTATGAATATATCTCAAATGGGACCCTCTATGACCATCTTCATGATAGGTATCCCAATTTTCTAGACTGGAAAAAAAGGCTTAAGATTGCTTTTCAAACAGCTGAAGCATTGGCTTACTTGCATTCTTCTGCACACACCCCTATTTACCATAGAGATGTTAAGTCAACAAATATACTATTGGACGATGAATTTAACGCAAAAGTTTCGGATTTTGGACTCTCAAGATTGGCTAACCCGGGACTTAGTCACGTGTCTACATGTGCTCAGGGAACACTAGGGTACTTGGATCCTGAATACTATCGCAACTACCAGTTAACCGATAAAAGTGATGTTTATAGCTATGGAGTTGTGCTGCTAGAGCTTTTGACTTCACAGAAAGCAATAGACTTTTCTCGTGATCAAGATGATGTTAACTTGGTAATTCATGTGAGTCAATATGCAAACAACGGCGCAATCATGCAAGTGGTTGATCAAAGGCTTCTTCTATCTGTGGAACCCTTAAGTAGTAAATTGATCACAAGCATAAAACTCTTTTGGGAGCTTGCACATGATTGTCTTAGGGAGAAGAAAGTTGAAAGACCTAGTATGAGGGATATTGTTGAACGCCTCCTATGCATAATTAGGATTGAAGATCAAGAGTGA 1878 0.4047 MIVESNRSCFRYAFLLCLLFCHYTCSQKTCPNCGSMKVPYPLSTEQSCGDPFYRLRCDPHSQKLYFDTLNGSSYVVLRIMSSIQRMVLQSSPWLPSSCVTQDMPVSNGIWLNQSLPFNITSSNTVFLFNCSPRLLVSPLNCTSSSICHRYLENSGHVDKNRAVKCASGLHPCCTFVAGGMPSAYKIRLHSSGCKAFRSILHLDQDKPPNQWEEGLEIQWSLPSEPVCRTQSDCSRDSKCSPSSRDTLFRCLCNRGFHWEPFAATCVRYKRKSKWKTSLVVSIVVIAFFSLAVVLVIVTKSFKHREKQAKEREIVLKSNTGGEKPYKTFQLKELKKATKCFSQDRILGSGGFGEVYKGELQNGTIVAVKKARVGNLKSTQQVLNEVSILSQVNHKNLVRLLGCCVESEQPLMIYEYISNGTLYDHLHDRYPNFLDWKKRLKIAFQTAEALAYLHSSAHTPIYHRDVKSTNILLDDEFNAKVSDFGLSRLANPGLSHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSYGVVLLELLTSQKAIDFSRDQDDVNLVIHVSQYANNGAIMQVVDQRLLLSVEPLSSKLITSIKLFWELAHDCLREKKVERPSMRDIVERLLCIIRIEDQE 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04379 625 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 16 618 IPR044652 GO:0004672
Trre13g04379 625 Pfam Protein tyrosine and serine/threonine kinase 342 615 IPR001245 GO:0004672|GO:0006468
Trre13g04379 625 Gene3D Transferase(Phosphotransferase) domain 1 416 625 - -
Trre13g04379 625 CDD STKc_IRAK 346 615 - -
Trre13g04379 625 SMART serkin_6 340 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04379 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Trre13g04379 625 ProSitePatterns Protein kinases ATP-binding region signature. 346 369 IPR017441 GO:0005524
Trre13g04379 625 ProSiteProfiles Protein kinase domain profile. 340 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04379 625 SUPERFAMILY Protein kinase-like (PK-like) 323 615 IPR011009 -
Trre13g04379 625 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 312 415 - -
Trre13g04379 625 Gene3D Phosphorylase Kinase; domain 1 297 415 - -
Trre13g04379 625 FunFam Wall-associated receptor kinase-like 20 416 625 - -
Trre13g04379 625 ProSitePatterns EGF-like domain signature 2. 250 265 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04379 Trre-Chr13 51416432 51418309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04379 30 625 Receptor kinase-like Gene Family AT5G02070 46.571 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trre13g04379 PK_Tyr_Ser-Thr 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04379 - - gmx:100804678 1033.48