Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04376 ATGGCGGTTTCTCCGTCGGTCGCCGCCACTCCGGCTTCTCTTTACGTCGGCGACCTTCATCCCGATGTCTCCGACGGTCAACTTCATGAAGCTTTCTCCGATTTTAAGACTCTTGCTTCCGTTCGCATTTGTAGAGATTCTTCTACCGGACGCTCACTCTGTTATGGCTATGTCAACTTCCTTTCTCCTCAAGACGCAATTCGTGCGATTGAGCTAAAGAATCATTCTACCTTGAATGGAAAGGCGATAAGGGTTATGTGGTCGCGACGAGATCCTGATGCAAGGAAAAGTAGCATAGGGAACGTGTTTGTTAAGAATTTAGCTGAATCAATAGATAATTCTGGACTAGAAGATATGTTTAAAAAGTTTGGAAATATTTTGTCAAGCAAAGTTGTAATGTCTGAGGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAAACAGAGGAATCTGCAAATACTGCTATCGAGAAGATGAATGGCTCTACTGTTGATGATAAGCAGATATATGTTGGGAAGTTTGTCAAGAAAAGTGACCGCGTAATGTCTGGCGCTGATGCAAGATATACAAACTTGTACATGAAGAATTTGGACCTAGATATTACAGACACATTTCTAAAGGAAAGGTTTTCCTCTTTTGGGCAAATCATTAGCCTGGCTGTTGCAAAGGACAGCAATGGGATGTCAAAGGGTTTTGGCTTTGTGAACTTCGAGAATCCAGATGATGCTAAAAGGGCAATGGAAGCAATGAATGGATTGCAACTTGGTTCAAAGATTCTGTATGTAGCCCGGGCACAAAAGAAGGCTGAGCGTGAGCAGATCTTGCACCAGCAGTTCGAAGAGAAACGAAAGGAACAAGTCTTGAAATATAAGGGGTCAAACGTTTATGTGAAGAATATTGATGACAATGTTAGTGATGAAGAACTGCGAGGTCATTTTAGTGCATGTGGCACTATAACTTCTGCAAAAGTTATGCGAGATGAAAAAGGGATAAGCAAAGGATTTGGTTTTGTCTGCTTCTCCACTCCTGAGGAGGCTAATAAAGCTGTGAACACTTTTCATGGATTCATGTTTCATGGTAAACCACTATATGTTGCTCTTGCTCAGAGGAAAGAGGACAGACAAGCACAGTTGCAGCTCCAATATGCACAGCAAATTGCAGGACTAGCTGGGCCTTCAACTGCTATTGTCCCTGGTGGATATCCTCCTTTCTACTACACAGCTACTGGTGTTGTTTCACACGCACCTCCTCGGGCTGGGCTCATGTATCAGCCTATGGCATTGAGGCCAGGATGGAGGGCTAATGGCTCTGCACCTCCTGCAAGATCATTCCAACAGTCACCCGCACCGGTTGTTTCTAGCAATACTAGGCAGCATAGGCAAAATAGGGGCAGGATGAATGGCCATGCAGCATCACAGGGAAATACTCACTCTGGTATGCCACAAGCCCAGCAGGCTTCTCAGTCAGTGATCTCTTCAAGAGAGTCAAGTACTCAGCAGAGAACCGGACAGGCTAAGTACGTACCTGGTGGGCGCCACCGTGAGATGGAAAAAGGATCTGGATTCTCATTTAGTGGTTCTAACTCTGGTGGAGGTGCCCAGGGATCAGAAGTGCTACACAGCATGCTTGCTAATGCTACTCCAGAGCAGCAGAAAGAGATACTAGGCGAGCATCTCTACATGCTTGTCCAGAAACTCAAGCCTAACCTAGCAGCAAAGATTACTGGGATGCTTTTGGAGATGGACAATGCTGAATTGCTGGTTCTCATGGAATCACCCGAGTCTCTTTCTGCCAAGGTGGAAGAAGCTTTCCAAGTGCTGAAGAACTCTAAAACTAAAGTTTCTGGTCAGGATGTACTTCATTCGAATTTCCTCTCAGCTGAGGTTGCAGTCAACTGA 1902 0.4501 MAVSPSVAATPASLYVGDLHPDVSDGQLHEAFSDFKTLASVRICRDSSTGRSLCYGYVNFLSPQDAIRAIELKNHSTLNGKAIRVMWSRRDPDARKSSIGNVFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSEDGKSKGYGFVQFETEESANTAIEKMNGSTVDDKQIYVGKFVKKSDRVMSGADARYTNLYMKNLDLDITDTFLKERFSSFGQIISLAVAKDSNGMSKGFGFVNFENPDDAKRAMEAMNGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNVYVKNIDDNVSDEELRGHFSACGTITSAKVMRDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQAQLQLQYAQQIAGLAGPSTAIVPGGYPPFYYTATGVVSHAPPRAGLMYQPMALRPGWRANGSAPPARSFQQSPAPVVSSNTRQHRQNRGRMNGHAASQGNTHSGMPQAQQASQSVISSRESSTQQRTGQAKYVPGGRHREMEKGSGFSFSGSNSGGGAQGSEVLHSMLANATPEQQKEILGEHLYMLVQKLKPNLAAKITGMLLEMDNAELLVLMESPESLSAKVEEAFQVLKNSKTKVSGQDVLHSNFLSAEVAVN 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04376 633 Gene3D - 277 382 IPR012677 -
Trre13g04376 633 Gene3D - 181 276 IPR012677 -
Trre13g04376 633 CDD RRM2_I_PABPs 99 174 IPR045305 -
Trre13g04376 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Trre13g04376 633 FunFam Polyadenylate-binding protein 182 276 - -
Trre13g04376 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Trre13g04376 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Trre13g04376 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Trre13g04376 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Trre13g04376 633 SUPERFAMILY RNA-binding domain, RBD 291 383 IPR035979 GO:0003676
Trre13g04376 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Trre13g04376 633 SUPERFAMILY PABC (PABP) domain 540 619 IPR036053 GO:0003723
Trre13g04376 633 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 609 IPR006515 GO:0003723
Trre13g04376 633 Coils Coil 263 283 - -
Trre13g04376 633 FunFam Polyadenylate-binding protein 534 620 - -
Trre13g04376 633 CDD RRM4_I_PABPs 293 371 - -
Trre13g04376 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Trre13g04376 633 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 536 613 IPR002004 GO:0003723
Trre13g04376 633 MobiDBLite consensus disorder prediction 434 534 - -
Trre13g04376 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Trre13g04376 633 SMART rrm1_1 192 264 IPR000504 GO:0003723
Trre13g04376 633 SMART rrm1_1 13 86 IPR000504 GO:0003723
Trre13g04376 633 SMART rrm1_1 295 367 IPR000504 GO:0003723
Trre13g04376 633 SMART rrm1_1 101 173 IPR000504 GO:0003723
Trre13g04376 633 SMART rrm2_1 192 264 IPR003954 GO:0003676
Trre13g04376 633 SMART rrm2_1 101 173 IPR003954 GO:0003676
Trre13g04376 633 SMART rrm2_1 295 367 IPR003954 GO:0003676
Trre13g04376 633 PANTHER RNA BINDING PROTEIN 12 71 - -
Trre13g04376 633 MobiDBLite consensus disorder prediction 440 506 - -
Trre13g04376 633 Pfam Poly-adenylate binding protein, unique domain 543 608 IPR002004 GO:0003723
Trre13g04376 633 SMART poly_2 548 611 IPR002004 GO:0003723
Trre13g04376 633 Gene3D - 534 626 - -
Trre13g04376 633 SUPERFAMILY RNA-binding domain, RBD 101 272 IPR035979 GO:0003676
Trre13g04376 633 Gene3D - 94 180 IPR012677 -
Trre13g04376 633 Gene3D - 2 93 IPR012677 -
Trre13g04376 633 FunFam Polyadenylate-binding protein 101 181 - -
Trre13g04376 633 FunFam Polyadenylate-binding protein 4 99 - -
Trre13g04376 633 FunFam Polyadenylate-binding protein 277 385 - -
Trre13g04376 633 SUPERFAMILY RNA-binding domain, RBD 9 94 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04376 Trre-Chr13 51383772 51388003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04376 12 631 Eukaryotic Initiation Factors Gene Family AT2G36660 53.600 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04376 K13126 - gmx:100779547 1035.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04376 13 51383772 51388003 Trre13g04376 13 51383772 51388003 ECH
Trre13g04376 13 51383772 51388003 Trre1g02484 1 20129211 20132618 PCT