Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04370 ATGGACACAGTGTTGGTACCACCTTGGTTAGAACCATTGTTGAAAACACCGTTTTTCAATATGTGTCGGATTCACGCTGACGCAGCTAGAAATGAGTGTAACATGTATTGTTTAGATTGCAACAATGGCGACGGTGCTTTTTGTTTCTACTGCCGTTCTTCAAGACACAAAGATCACCAAGTCATTCAGATAAGAAGATCTTCGTATCATGATGTTGTGAGAGTATCAGAGATTCAGAAAGTGTTGGATATAAGTGGAGTACAAACATATGTGATAAACAGTGCTAGAGTATTGTTCTTGAATGTGAGGCCACAACCAAAATCTGGGAAAGGAGTAGCACACATTTGTGAGATTTGTGGAAGGAGTTTATTAGATTCATTTCGGTTCTGTTCTTTGGGATGTAAGCTTGAAAGAATAAAGAAAAATGGAGATGCAAGTTTTGCTTTAGAGGGTATGAGTGAAGCATTGACAATGGAAGGGGTGTCAAGTAGTAGATCAGAAGAAGAATTGCGTGAAGGCTCAACACAAGATATGTATCCGGTCACGCCTCCTCCACCTCCTTTAAATTCAAGGAGAAGAAAAGGTGAAAAAGAATAG 597 0.3953 MDTVLVPPWLEPLLKTPFFNMCRIHADAARNECNMYCLDCNNGDGAFCFYCRSSRHKDHQVIQIRRSSYHDVVRVSEIQKVLDISGVQTYVINSARVLFLNVRPQPKSGKGVAHICEICGRSLLDSFRFCSLGCKLERIKKNGDASFALEGMSEALTMEGVSSSRSEEELREGSTQDMYPVTPPPPPLNSRRRKGEKE 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04370 198 Pfam PLATZ transcription factor 65 136 IPR006734 -
Trre13g04370 198 SUPERFAMILY B-box zinc-binding domain 19 66 - -
Trre13g04370 198 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 5 195 - -
Trre13g04370 198 MobiDBLite consensus disorder prediction 158 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04370 Trre-Chr13 51335189 51337561 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Trre13g04370 PLATZ 7.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04370 - - psat:127125735 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04370 13 51335189 51337561 Trre13g04370 13 51335189 51337561 ECH
Trre13g04370 13 51335189 51337561 Trre1g02490 1 20158797 20159928 PCT