Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04362 ATGGAGGCTTCCGTCAAGCCAGAATCGGAATCCATAACCGTTTCTCTTGATCAGTCTCATGATGAACGAAAAAATTCTACGGTCAACGGTTGCATTGTTTATACTCGAGTCAAGAGGTCTCTCAATTCTTGTAACAGTTTTTCCGAAGACGTTGATTCCAAAAGATTCAAGGAGAATGCGGAGATTCCGCTTGAATTGGAGAATGCGGATGGTGGTGAGTGTCGTGATGAGCTGAAGAGTGAACCTCTTGAGGTTCCGGTGACGACGTTCAAGCGGATTACAAGATCGGCGATGAAAGCAAAGGCTGAGTCCGGTGTGGAGACTGTGAATGTGTTAGAACAACAAGGTGAAGCCGTTGTAACTGTTAATAAAGATGATGGTAAGGTGCCAGTGAGAATTTTCAAGCGAATTACACGTTCGGCGATGAAAGAAAAGGTTGAGTCTGGTGAGGATAAGGAGGATAAGGTGAATGTGTTGGAGCAACATGGTTCTGGTGCTGCTGTTGCACGTGGTAAAGGTAATGGTAAGGTGCTTGTGAGGGATTTCAAGCGGGTTACACGATTGGCTATGAAAGTAAAAGATGAGTCTGGTGAGGATAAGGTGACTGAGTTAGAACAGCAGGGTGCTGCTGTTGCAAGTGGTGAAGTTGATAGGACATTTAAACGGGTTACACGATCGGCAGCAATGAAAGCGGGTGAGGAGATGGTGACAGAGTTAAAACAAGATGGTTCTGTGGTTGCCAGTGAAATTAATGGTGCATTCCCTGCTTCGAGGAACAAGTTGGAGTTGAAAATGTCGAAGAAGATTGTGGTCAATAAAAAGCCTACAACAGTCAAGGAGCTCTTTCTTACGGGTTTACTTGATGGTGTCTCTGTGGTTTACATTGGTGGCATTAAGAAGGGTCCAGGATTAAGGGGTGTTATAAGAGATGGGGGAATATTATGTTCATGCTCTCTCTGTAATGGACACAGGGTTATTCCACCTTCCCAATTTGAGATCCATGCTTGCAAACAATATAAGAGAGCAGTAGAGTATATTTGCCTTGAAAATGGGAAGAGTCTGATTGATCTGTTGAGAGCGTGCAGGGGAGCTCCCCTGCATGCTTTGGAGGCAACAATTCAAAACTTTGTTTGTTCAACGCCCGAGGAAAAATATTTTACTTGTAAAAGGTGCAAAGGATGTTTTCCATCATGTATGAAAAGAGTGGGACCTATATGCTGTTCTTGTGTAGAATCAAGTAAATCTGAAGAAACTGCTAAGAATGTAGTTGGCAAAAGAATCAGGTCTCCTAGACCAGTGTTGGCCTCCAAGTTATCCTGTGCTTCTGAGTTGGCTATCTTTTCAAAAAGTAAGATACACAAGAAGAAAAGAACAAAGTCATCAATAAGGGTCAGCAGCTCAAATTCTTCCAAGAGAGCTTCTGTGCCCATTCTACCCCGGAAGAAAATGATGCCGAAGATGAAAAAGAAGTCATCATCCGTAAAGTTGAAGACCACTTCAAATTCAAATTGTTTATCTCCACAAAATAAGAGTCAATGGAAGATAACTAAGAAGGATCATCGACTGCACAAGTTAGTATTTGAAGAAAATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCAGGCGGACAGAAATTGCTTGAAGGTTTCAAAATGGGCTCCGGAATTGTTTGCAGATGCTGCAACACTGAGATCAGCCCCTCGCAGTTTGAGGTTCATGCAGGCTGGGCTTCTCGCAAGAAACCTTATGCATACATTTACACATCAAATGGGGTGTCTCTCCATGAATTATCAATATCTCTCTCAAAAGGCAAAAAATACTCTGCAAATGACAATGATGATCTATGCGTTGTTTGTTGGGATGGTGGAAATCTGTTGCTTTGTGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCATCTCTATCGAGTATTCCACGTGGTGACTGGTACTGTCAATTTTGCCAAAACATGTTCCAGAGGGAAAAGTTTGTTGCATACAATGTCAATGCTTTTGCTGCTGGAAGGGTTGAAGGAGTTGATCCTATTGAGCAAATCACCAAGAGATGCATTCGCATAGTCAAAGACATTGATGCTGAGCTTAGTGGGTGTGCTTTATGCAGGGGTGTTGACTTCAGCAGATCTGGCTTTGGTCCACGCACAATAATATTTTGTGATCAGTGTGAAAAGGAGTATCATGTTGGCTGTTTGAGGGAGCACAAGATGGCATTTCTAAAGGAATTGCCAAAAGGTAATTGGCTTTGTTGCAATGATTGCACGAGAATACATTCTACTTTGGAGAACGTTTTAGTTAGAGGGGATGAGAGACTCCCTGAATCTCTATTGGCTATTATAAAGAAAAAGCAAGAGGTAAAAGGATTGGATCCCATGAATGATATCGATGTGAAATGGAGGATTCTTAGTGGAAAAAACGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTATCTCTATCTTTCATGAATGCTTTGCTCCTATAGTTGATGCAGCTAGCGGACGTGACCTTATTCGAGCAATGGTTTATGGAAAGAGTGTGCGGGGTCAAGAGTTTGGAGGAATGTATTGTGCATTACTAATAGTCAATTCATCTGTGGTATCTGCGGGCATGCTTCGAATCTTTGGCACTGATATTGCTGAACTTCCTTTAGTTGCAACAAGTAACAGTCACCATGGGAAGGGCTACTTCCAAACACTCTTTTCCTGCATTGAGAGGTTATTGGCTTTCATGAAAGTAAAGAACCTTGTGCTACCAGCTGCAGAAGAAGCACAGTCCATTTGGACAGATAAATTTGGGTTTAGCAAGATTAAACCAGACCAGCTTGCCAACTACAGAAGGAACTGCAATCAGTTTGTGACCTTCCAAGGGACAAATATGCTTCATAAAATGGTGCCTCCATGTCGAATCATCAATAATCATCCCTGA 2949 0.4232 MEASVKPESESITVSLDQSHDERKNSTVNGCIVYTRVKRSLNSCNSFSEDVDSKRFKENAEIPLELENADGGECRDELKSEPLEVPVTTFKRITRSAMKAKAESGVETVNVLEQQGEAVVTVNKDDGKVPVRIFKRITRSAMKEKVESGEDKEDKVNVLEQHGSGAAVARGKGNGKVLVRDFKRVTRLAMKVKDESGEDKVTELEQQGAAVASGEVDRTFKRVTRSAAMKAGEEMVTELKQDGSVVASEINGAFPASRNKLELKMSKKIVVNKKPTTVKELFLTGLLDGVSVVYIGGIKKGPGLRGVIRDGGILCSCSLCNGHRVIPPSQFEIHACKQYKRAVEYICLENGKSLIDLLRACRGAPLHALEATIQNFVCSTPEEKYFTCKRCKGCFPSCMKRVGPICCSCVESSKSEETAKNVVGKRIRSPRPVLASKLSCASELAIFSKSKIHKKKRTKSSIRVSSSNSSKRASVPILPRKKMMPKMKKKSSSVKLKTTSNSNCLSPQNKSQWKITKKDHRLHKLVFEENGLPDGTEVAYYAGGQKLLEGFKMGSGIVCRCCNTEISPSQFEVHAGWASRKKPYAYIYTSNGVSLHELSISLSKGKKYSANDNDDLCVVCWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCQFCQNMFQREKFVAYNVNAFAAGRVEGVDPIEQITKRCIRIVKDIDAELSGCALCRGVDFSRSGFGPRTIIFCDQCEKEYHVGCLREHKMAFLKELPKGNWLCCNDCTRIHSTLENVLVRGDERLPESLLAIIKKKQEVKGLDPMNDIDVKWRILSGKNASPETRPLLLEAISIFHECFAPIVDAASGRDLIRAMVYGKSVRGQEFGGMYCALLIVNSSVVSAGMLRIFGTDIAELPLVATSNSHHGKGYFQTLFSCIERLLAFMKVKNLVLPAAEEAQSIWTDKFGFSKIKPDQLANYRRNCNQFVTFQGTNMLHKMVPPCRIINNHP 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04362 982 PANTHER AUTOIMMUNE REGULATOR 51 971 - -
Trre13g04362 982 Pfam PHD-finger 617 658 IPR019787 -
Trre13g04362 982 SMART PHD_3 704 761 IPR001965 -
Trre13g04362 982 SMART PHD_3 616 657 IPR001965 -
Trre13g04362 982 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 763 IPR013083 -
Trre13g04362 982 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 602 694 IPR013083 -
Trre13g04362 982 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 603 680 - -
Trre13g04362 982 SUPERFAMILY FYVE/PHD zinc finger 607 662 IPR011011 -
Trre13g04362 982 MobiDBLite consensus disorder prediction 457 510 - -
Trre13g04362 982 SUPERFAMILY FYVE/PHD zinc finger 695 758 IPR011011 -
Trre13g04362 982 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 860 946 IPR016181 -
Trre13g04362 982 MobiDBLite consensus disorder prediction 494 510 - -
Trre13g04362 982 ProSitePatterns Zinc finger PHD-type signature. 617 656 IPR019786 -
Trre13g04362 982 ProSiteProfiles Zinc finger PHD-type profile. 614 659 IPR019787 -
Trre13g04362 982 Pfam Tify domain binding domain 554 598 IPR032308 -
Trre13g04362 982 Pfam Tify domain binding domain 306 361 IPR032308 -
Trre13g04362 982 MobiDBLite consensus disorder prediction 1 25 - -
Trre13g04362 982 CDD PHD1_AIRE 616 656 - -
Trre13g04362 982 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 701 763 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04362 Trre-Chr13 51282488 51290526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04362 24 979 PHD Transcription Factor Family AT2G36720 45.436 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre13g04362 TDBD 7.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04362 - - cam:101512705 1516.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04362 13 51282488 51290526 Trre1g02496 1 20218470 20225638 PCT