Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04361 ATGAGATTCAACAGATACAGAACCCTCTTTTGGCTTTCCGGCTTTGTCATCTTTCTCTTTTCTATCATTATTGTTCATTACACCACACCACTTTCCAACACCACTAACACTACCATTAGTAGTTCTCAAAGTATTTTTGGTTTTCAACTTGGCATATTGAGCAAGATTATAAAGCTAAGTGGTGTTCAAGATTTTGTTTCTTTGTTGATAACAAGTATTGCTAGTAGGAGACATCATCATAGGAAGAGTCATAAGGAAAAATGTGATAAGGCCAAATGGGCTTCCAAGCTAATTTTAGACTATAATGTGACCACTGTTTTTACGGTTGATTTAAAGGGTTGTGCTAACTTTACTAGTGTGCAAAAAGCGATTGATGCTATTCCTGAATCTAGCTCAAATATCACTCGTATCATAATCAATTCTGGTACATACAGAGAGAAGGTAGTGGTCCAAGCCAACAAAACAAACATAATACTACAAGGTCAAGGGTATCTTAATACAATTATAGAATGGAATGACACTGCAAATTCCACTGGCGGAACTTCCTATAGCTACTCATTTGCAGTATTTGCTTCTAAGTTCACAGCTTATAACATTAGCTTCAAGAACACTGCTCCTCCACCGTCACCGGGAGAGGTTGGGGCACAGGCCGTGGCACTGAGAGTTACTGGCGATCAAACGGCATTCTATGGATGTGGATTTTATGGTGCGCAGGACACACTCAATGACGACAGTGGGAGACATTATTTTAAGGAATGTTTCATCGAAGGATCCATTGATTTCATATTTGGAAATGCTAGATCGCTTTATGAGGATTGCACTATAAACTCTATAGCAAAACAAGATTTGAGTGGCATTGGTGGATCTATCACAGCTCAAGGAAGACAATCTTTGAAGGAACAAACAGGTTTTTCCTTTGTGAATTGCAACATTGTTGGAAGTGGAAAAGTGTGGCTTGGAAGAGCTTGGGGAGCATTTGCCACAGTTGTTTTCTCAACAACAAACATGTCTGATGTTATAGCTGCTGAGGGATGGAATGATTGGAGAGATCCATCCAGAGACCAGAGTGTTTTCTTTGGGGAGTACCATTGTATAGGACTTGGAGCAAATTATACATCTAGAGTCTCTTATGCAAGACAACTCAGGGATTATGAAGCAATCTCATATATAAATGTTTCATACATTGATGGGAATAATTGGCTACTTAATTATAATTAG 1218 0.3867 MRFNRYRTLFWLSGFVIFLFSIIIVHYTTPLSNTTNTTISSSQSIFGFQLGILSKIIKLSGVQDFVSLLITSIASRRHHHRKSHKEKCDKAKWASKLILDYNVTTVFTVDLKGCANFTSVQKAIDAIPESSSNITRIIINSGTYREKVVVQANKTNIILQGQGYLNTIIEWNDTANSTGGTSYSYSFAVFASKFTAYNISFKNTAPPPSPGEVGAQAVALRVTGDQTAFYGCGFYGAQDTLNDDSGRHYFKECFIEGSIDFIFGNARSLYEDCTINSIAKQDLSGIGGSITAQGRQSLKEQTGFSFVNCNIVGSGKVWLGRAWGAFATVVFSTTNMSDVIAAEGWNDWRDPSRDQSVFFGEYHCIGLGANYTSRVSYARQLRDYEAISYINVSYIDGNNWLLNYN 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04361 405 Gene3D - 100 405 IPR012334 -
Trre13g04361 405 FunFam Pectinesterase 101 405 - -
Trre13g04361 405 SUPERFAMILY Pectin lyase-like 104 401 IPR011050 -
Trre13g04361 405 ProSitePatterns Pectinesterase signature 2. 255 264 IPR033131 -
Trre13g04361 405 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 97 401 - -
Trre13g04361 405 Pfam Pectinesterase 109 398 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04361 Trre-Chr13 51278926 51281007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04361 99 401 Carbohydrate Esterase AT1G05310 56.536 3.40e-123 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04361 - - gmx:100802034 652.129