Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04342 ATGCCGATCAGAAACATAGCAGTCGGAACTCCAGCAGAGGCAACTCACCCAGACACTTTGAAAGCTGGTTTGGCTGAGTTAATCTCAACCTTCATCTTCGTCTTCGCTGGTTCCGGTTCCGGTATCGCTTACAACAAGCTTACCGATAACGGTGCCGCCTCACCCGCCGGTCTTATCTCTGCTTCCATCGCTCATGCATTCGCTCTCTTTGTTGCTGTCTCCGTTGGTGCTAACATCTCCGGTGGACATGTTAACCCCGCCGTCACTTTCGGTGCCTTCGTTGGTGGTAACATCTCCCTCTTCCGTGGTATCGTTTACATCATCGCTCAACTTATCGGATCCGTCCTCGCTTCCTTACTCCTCGTCTTTGTTACCGCATCGTCTGTTCCAGCATTCGCGCTATCAGAGGGAGTTGGAATTGGACCTGCTTTGGTGTTGGAGATTGTGATGACCTTTGGATTGGTGTACACTGTCTACGCTACAGCCGTTGACCCAAAGAAGGGTAATATTGGAATTATTGCACCTATTGCTATTGGTTTCATCGTTGGTGCTAACATTTTGGTTGGTGGAGCTTTCACCGGAGCATCCATGAACCCAGCTGTGTCATTTGGGCCTGCTGTTGTGAGCTGGAGCTGGTCCAACCACTGGATCTACTGGGCCGGCCCACTTATTGGTGGTGGAATTGCTGGAATTATCTATGAAGTTCTTTTCATTAGCCACACTGGTCATGAACAGCTTCCAACCACTGACTACTAG 756 0.4987 MPIRNIAVGTPAEATHPDTLKAGLAELISTFIFVFAGSGSGIAYNKLTDNGAASPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNISLFRGIVYIIAQLIGSVLASLLLVFVTASSVPAFALSEGVGIGPALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVVSWSWSNHWIYWAGPLIGGGIAGIIYEVLFISHTGHEQLPTTDY 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04342 251 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g04342 251 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g04342 251 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g04342 251 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g04342 251 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g04342 251 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g04342 251 FunFam Probable aquaporin TIP1-1 4 251 - -
Trre13g04342 251 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g04342 251 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g04342 251 Gene3D Glycerol uptake facilitator protein. 4 251 IPR023271 -
Trre13g04342 251 PANTHER AQUAPORIN-8 6 246 IPR034294 -
Trre13g04342 251 SUPERFAMILY Aquaporin-like 13 244 IPR023271 -
Trre13g04342 251 ProSitePatterns MIP family signature. 83 91 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04342 Trre-Chr13 51021277 51022619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04342 1 251 Major Intrinsic Protein MIP AT2G36830 76.587 1.41e-136 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04342 K09873 - gmx:100527509 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04342 13 51021277 51022619 Trre13g04342 13 51021277 51022619 ECH