Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04340 ATGGAATCTCATAACGTTCATGTCTCTCCATCTGAAACCGGTTTCGGACATTACGGGTGTTCGCATTATAAAAGGAGATGCAAGATCATAGCACCTTGCTGCAATGAAATTTTCAATTGCAGACATTGTCATAACGAATCTAAGAATTTGATTCAAGTTGATCCTGCTAACAGGCACGACATTCCTCGCCATGATGTTAAGAGGGTTATCTGTTCCTTGTGTAGCACCGAGCAAGATGTTCAACAGGTTTGCATTCAATGTGGTGTTTGCATGGGTAGATACTTTTGCTCCAAATGCAAGTTCTTCGATGACGATGTATCAAAAAAGCAATACCATTGCAATGAATGTGGTATATGCAGAACTGGAGGTGAAGAGAACTTTTTCCACTGCAACAAATGTGAATGCTGCTATTCATCGTCGATGAAGGATTCACACCATTGTATTGAAAAAGCAATGCATCACAATTGCCCAGTTTGCTTTGAGTTTCTTTTCGATACAACGAAAGATATCACTGTATTGCCATGTGGTCACACCATACATTTGGGATGTGTGAGAGAAATGCAACAGCATTGCCAGTATTCGTGCCCTGTTTGTTCAAAGTCATTCTGTGATATGTCGCATGTGTGGGGAAAAATGGATGAGGAGGTTGCATCGATGCCTATGCCTGAAATGTATCAAAACAAGATGGTTTGGATTCTATGCAATGACTGCGGAGAAACATCTGAAGTAAAATATCATATTGTAGCGCACAAGTGCCTTAAATGCAAGTCCTACAACACCAGAAAGACACAAGCCGCGTCTGCGTCGTGCATGTCAAGAATGGAAGAGATGGTTAGATGA 840 0.4119 MESHNVHVSPSETGFGHYGCSHYKRRCKIIAPCCNEIFNCRHCHNESKNLIQVDPANRHDIPRHDVKRVICSLCSTEQDVQQVCIQCGVCMGRYFCSKCKFFDDDVSKKQYHCNECGICRTGGEENFFHCNKCECCYSSSMKDSHHCIEKAMHHNCPVCFEFLFDTTKDITVLPCGHTIHLGCVREMQQHCQYSCPVCSKSFCDMSHVWGKMDEEVASMPMPEMYQNKMVWILCNDCGETSEVKYHIVAHKCLKCKSYNTRKTQAASASCMSRMEEMVR 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04340 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 219 IPR013083 -
Trre13g04340 279 ProSiteProfiles Zinc finger CTCHY-type profile. 91 155 IPR017921 -
Trre13g04340 279 SMART ring_2 156 198 IPR001841 -
Trre13g04340 279 Pfam Zinc-ribbon 203 261 IPR039512 -
Trre13g04340 279 SUPERFAMILY Zinc hairpin stack 92 149 IPR037275 -
Trre13g04340 279 SUPERFAMILY RING/U-box 154 205 - -
Trre13g04340 279 SUPERFAMILY CHY zinc finger-like 17 91 IPR037274 GO:0008270
Trre13g04340 279 ProSiteProfiles Zinc finger RING-type profile. 156 199 IPR001841 -
Trre13g04340 279 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 16 267 - -
Trre13g04340 279 Gene3D - 227 270 - -
Trre13g04340 279 Pfam RING-type zinc-finger 156 196 IPR027370 -
Trre13g04340 279 ProSiteProfiles Zinc finger CHY-type profile. 13 89 IPR008913 GO:0008270
Trre13g04340 279 Pfam CHY zinc finger 20 101 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04340 Trre-Chr13 50990446 50993187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04340 18 261 C2H2 Transcription Factor Family AT3G18290 40.000 1.83e-53 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04340 K10144 - mnt:21405387 504.597