Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04337 ATGTTTCAAACAATATGCATTTTGCTAATTATCTTTGTTTTGAGTTCATTTTCACCACATGGAAAAGCAATGCTGAATTTAACTCTTCCTGGAACACACCCTGATCCTGAAGCTGTTGCTCATGAAGTTCATAGGAAGGTGAATGCTTCAATGGCGAGAAGGGAAATGCTATCTTCAGGATCAGCATGCATGACAGGAAACCCGATCGACGATTGTTGGAAATGCGACCCAGAATGGCCAAACAATCGACAAAGGTTAGCGGATTGTGCAATAGGGTTTGGTCAGTATGCTAAAGGAGGAAAAGGTGGTGAATATTATGTTGTAACAGATTCCTCAGATGATGATCCTGTTACCCCAAAACCTGGTACATTAAGATATGCTGTGATAAAAAATGAACCATTGTGGATAGTGTTTCCTAGTAACATGTTGATTAAGCTAAAGCAAGAACTGATTTTTAATAGTTATAAGACCATTGATGGACGTGGTGCTGATGTTCATATTGTTGGAGGAGGGTGCATTACTTTGCAGTTTATAAGTAATGTTATTATACATAACATTCATATTCACCATTGTCATCCCTCAGGAAACACAAACGTGCGATCAAGTCCAGAACACTACGGCTACAGAACAATGTCGGATGGAGACGGAATATCCATCTTCGGTTCAAAAGACATATGGATTGACCATTGCACGCTCTCACGTTGCAAAGACGGACTAATAGACGCAGTAATGGGATCCACGGGAATAACAATATCCAACAACTTCATGTCACACCACAACGAAGTCATGCTCCTTGGACACAGCGACGACTACCTCCCTGACTCAGGAATGCAAGTCACAATTGCATTCAACCATTTTGGTCAGGAGCTTGTTCAGAGGATGCCGCGCTGCAGAAGAGGATACATCCACGTTGTCAACAATGATTTCACTCAATGGGAAATGTATGCCATTGGCGGGAGTGGAGAACCAACTATTAATAGTCAAGGAAATCGTTACGTTGCGCCTGTTAATCTTTTTGCTAAAGAGGTTACTAAGAGGGTTGAAACAGAACAAAATAAGTGGAAAGGGTGGAATTGGAGATCTGAAGGTGATGTTATGATTAATGGTGCATTTTTTGTTACTTCAGGTGAAAGTTTAGAGGTTAAGTATGAGAAGGCTTTTAGTGTTGAACCTCAATCTGCTAATCGGATTGTTCTTCTTACCATGAACTCTGGTGTTCTTGGTAATGCAAGGGACAATAACCTGGGGATGTGGAGCAGAGGACCAAGTAGCAACGATGGCGGCGTTTTGGATTCTGGCCCGGATTACACGGATGACATGTCGGCCAGTGTGCGAGTGTTGCCGTCTTCTTTTACTATGCTGATGGGCATCTTGTTGTCTTTTAGGGTGATACTGTTAAGGTTTAGTCAATGA 1413 0.419 MFQTICILLIIFVLSSFSPHGKAMLNLTLPGTHPDPEAVAHEVHRKVNASMARREMLSSGSACMTGNPIDDCWKCDPEWPNNRQRLADCAIGFGQYAKGGKGGEYYVVTDSSDDDPVTPKPGTLRYAVIKNEPLWIVFPSNMLIKLKQELIFNSYKTIDGRGADVHIVGGGCITLQFISNVIIHNIHIHHCHPSGNTNVRSSPEHYGYRTMSDGDGISIFGSKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNFMSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGQELVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGEPTINSQGNRYVAPVNLFAKEVTKRVETEQNKWKGWNWRSEGDVMINGAFFVTSGESLEVKYEKAFSVEPQSANRIVLLTMNSGVLGNARDNNLGMWSRGPSSNDGGVLDSGPDYTDDMSASVRVLPSSFTMLMGILLSFRVILLRFSQ 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04337 470 Gene3D - 66 408 IPR012334 -
Trre13g04337 470 SUPERFAMILY Pectin lyase-like 67 396 IPR011050 -
Trre13g04337 470 SMART amb_all 141 338 IPR002022 -
Trre13g04337 470 PRINTS Pollen allergen Amb family signature 386 409 IPR018082 -
Trre13g04337 470 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Trre13g04337 470 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Trre13g04337 470 PRINTS Pollen allergen Amb family signature 149 165 IPR018082 -
Trre13g04337 470 PRINTS Pollen allergen Amb family signature 213 234 IPR018082 -
Trre13g04337 470 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Trre13g04337 470 PRINTS Pollen allergen Amb family signature 113 138 IPR018082 -
Trre13g04337 470 PRINTS Pollen allergen Amb family signature 357 381 IPR018082 -
Trre13g04337 470 Pfam Pectate lyase 147 326 IPR002022 -
Trre13g04337 470 FunFam Pectate lyase 66 408 - -
Trre13g04337 470 PANTHER PECTATE LYASE 18-RELATED 30 409 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04337 Trre-Chr13 50959296 50963294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04337 1 470 Polysaccharide Lyase AT3G53190 71.190 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04337 K01728 - gmx:100775595 795.038