Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04326 ATGGTGGCTGCAGAGCACACCACCAATGGTGTCCTTAGTTTCACCTACAAACTTCTCCTAGGACGTTGGTTCATGTTATTTGCATCTTCACTAATCATGTCAGTAGCAGGTGCAACCTATATGTTTGGTCTATACTCAAACCAAATCAAAACATCTTTGTCCTATGACCAAACAACACTCAACCTTCTTAGTTTCTTCAAAGACCTCGGCGCCAATGTCGGCGTTATTTCAGGTTTAATCAATGAAATAACGCCGCCTTGGGTCGTTCTTTTAACCGGTACCATAATGAATTTCTTTGGTTACTTCATGATATGGCTTTCAGTCACAAAAAAAATTCCTACACCTAAAATTTGGCAAATGTGTCTTTATATTTGTCTTGGTGCAAATTCTCAAACTTTTACTAACACTGGTGCTTTAGTTACTTGTGTTAAGAATTTTCCTAATAGTCGTGGTAGTGTTTTAGGACTCTTAAAAGGTTATGTTGGTTTAAGTGGTGCTATAATTACACAAATTTATCATAGTTTATATTATAATAGTGATAATAATAATACACAATCTCTTATTTTGCTTATTGCTTGGCTTCCTGCTGCAGTTTCTTTTATTTTTCTTCCAACTATTAGAATTTTGAAATTGGAAACTATATTTCAACAACAAAAAGAAACAAAAGTTTTTTATAATTTTCTTTTTATTTCACTTGGTCTAGCTTGTTTACTCATGGTTTTGATCATTGTTCAAAATAAGTTCAATTTTTCAAGGATTGAGTATATAAGTGATGGAGTTGGTGTTATTATTTTACTCTTTCTTCCACTTGCTATTGTATTTAGAGAAGAATTAAAATTCTACAACTTCTCGAAAGATAATTCGATATCTCAGTTGAAAGTAGTTACTGATGTCCCACTTCAGAATGTGTCATCACACGAAAATGAAGTGGAATTATCAGCAACTAATGTGGATTCCGAGAAGAAAATTTCTTGTTTGAAGACAATATTCAAACCTCCGAATAGAGGTGAAGACTACACAATTTTGCAAGCTTTGTTTAGTATTGACATGTTAATTCTTTTCCTAGCAACAACTTTTGGTGTTGGTGGAACATTAACGGCGATTGATAATTTGGGACAAATCGGTCATTCGTTAGGATATCCAAATAAAAGTACAACAACTTTCGTGTCGCTAGTGAGTATATGGAACTATCTGGGACGGGTTGCATCTGGTTATACATCGGAGATCTTATTAACCAAATACAAAATCCCCCGTCCGTATCTACTCACTTTCATTATGCTTCTCTCTTGTGTTGGTCATATTCTAATTGCTCTTGGTATCTCAAACTCTCTTTATATCGCTTCGGTGGTTATTGGATTTTGTTTCGGAGCTCAATGGCCGCTGATGTTTGCGATCATATCGGAGATTTTTGGATTGAAATATTACTCAACTTTGTACAATTTTGGAGCTGTGGCTAGTCCTGTGGGATCTTATATATTTAATGTTAGAGTGGCTGGTCATTTATATGACAAAGAAGCTTTGAAACAATTGAAAGCTAAGGGACTAAAGAGACAAGAAGGTGTTAGCCTGTATTTTCGACAGGCAGTAATGAGTTGTAGTGAGATGTTGAAATCTCATTTATTGTATATCATTACGTTTTAA 1641 0.3467 MVAAEHTTNGVLSFTYKLLLGRWFMLFASSLIMSVAGATYMFGLYSNQIKTSLSYDQTTLNLLSFFKDLGANVGVISGLINEITPPWVVLLTGTIMNFFGYFMIWLSVTKKIPTPKIWQMCLYICLGANSQTFTNTGALVTCVKNFPNSRGSVLGLLKGYVGLSGAIITQIYHSLYYNSDNNNTQSLILLIAWLPAAVSFIFLPTIRILKLETIFQQQKETKVFYNFLFISLGLACLLMVLIIVQNKFNFSRIEYISDGVGVIILLFLPLAIVFREELKFYNFSKDNSISQLKVVTDVPLQNVSSHENEVELSATNVDSEKKISCLKTIFKPPNRGEDYTILQALFSIDMLILFLATTFGVGGTLTAIDNLGQIGHSLGYPNKSTTTFVSLVSIWNYLGRVASGYTSEILLTKYKIPRPYLLTFIMLLSCVGHILIALGISNSLYIASVVIGFCFGAQWPLMFAIISEIFGLKYYSTLYNFGAVASPVGSYIFNVRVAGHLYDKEALKQLKAKGLKRQEGVSLYFRQAVMSCSEMLKSHLLYIITF 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04326 546 SUPERFAMILY MFS general substrate transporter 225 494 IPR036259 -
Trre13g04326 546 CDD MFS_Mch1p_like 21 503 - -
Trre13g04326 546 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 23 524 - -
Trre13g04326 546 SUPERFAMILY MFS general substrate transporter 11 207 IPR036259 -
Trre13g04326 546 Pfam Nodulin-like 22 274 IPR010658 -
Trre13g04326 546 Gene3D MFS general substrate transporter like domains 211 504 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04326 Trre-Chr13 50897470 50899110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04326 1 523 Nodulin-like Gene Family AT2G39210 63.688 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04326 - - gmx:100818752 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04326 13 50897470 50899110 Trre13g04326 13 50897470 50899110 ECH