Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04320 ATGGCTCGGAGTATCTCGTATGTGACAGGGACGCAGCTTCTCTCTCTAAAACGGCAACCAACCATCGCCATCGTGGATGTGAGAGACGACGAGAGGAGTCACGATGGTCACATATCTGGTTCTCTTCATTACGCAAGCGACGGTTTCTCTCAAAACATCTCTAAGCTTCTTCAAGATGTTAAAGGCAAAGATACCCTCGTCTTTCACTGCGCTCTAAGTCAGGTTCGAGGCCCAAGTTGTGCTAGGAAGCTTGCTAATTATCTTGAAGAGAGCAAGGAAGATGTTGGGATAAAGAACATCATGGTCTTAGAACGTGGCTTCAATGGGTGGGAAGCTTCTGGTAGACCTGTTTGCCGCTGCAATAATGTTCCTTGCAAGGAACATGAAAGTGCTTAA 396 0.4672 MARSISYVTGTQLLSLKRQPTIAIVDVRDDERSHDGHISGSLHYASDGFSQNISKLLQDVKGKDTLVFHCALSQVRGPSCARKLANYLEESKEDVGIKNIMVLERGFNGWEASGRPVCRCNNVPCKEHESA 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04320 131 Gene3D - 1 130 IPR036873 -
Trre13g04320 131 FunFam Dual-specificity phosphatase CDC25 1 130 - -
Trre13g04320 131 SMART rhod_4 8 116 IPR001763 -
Trre13g04320 131 ProSiteProfiles Rhodanese domain profile. 18 119 IPR001763 -
Trre13g04320 131 Pfam Rhodanese-like domain 13 112 IPR001763 -
Trre13g04320 131 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 3 127 IPR036873 -
Trre13g04320 131 PANTHER M-PHASE INDUCER PHOSPHATASE DUAL SPECIFICITY PHOSPHATASE CDC25 5 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04320 Trre-Chr13 50856357 50858592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04320 1 75 Sulfurtransferasese or Rhodanese AT5G03455 73.333 9.51e-36 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04320 K18065 - csv:101204226 228.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04320 13 50856357 50858592 Trre13g04320 13 50856357 50858592 ECH