Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04307 ATGGGGAGAGCTCCTTGCTGTGACAAGGCTAATGTAAAGAAAGGTCCATGGTCTCCTGAAGAAGATGCAAAACTAAAGGATTACATAGAGAAACATGGAACTGGAGGCAATTGGATTACTCTTCCAAAAAGAGTTGGTTTGACAAGGTGTGGAAAAAGCTGTAGACTAAGATGGCTTAATTATCTTAGACCAAACATTAATCATGGTGAATTCTCTGACTCAGAAGATAAAATAATATGCACCCTTTTTGCTAGCATTGGAAGCAGGTGGTCAATAATAGCATCTAAGTTACAAGGCAGAACTGACAATGATGTAAAGAATTACTGGAACGCCAAACTTAAGAAAAAATTTATGTTCATAAACCATTCAGTGGAAATGAAATCTCAACAAGTTTCCCTTTTATCCATCCTTCAAAATTCAACATCAACATCAACATCTCCATCATTATCATTCATAGAAAGCAAAAACAGTTCATACTATCATCATCACTCCAATGGTTCTTTCACAAGTTCCTTTTCCAACTCATCAACCTTATCAAGTCTTTTAAGTGAAAACTCTTCTACTTCTGGAGCACAAGAAAGTTTCATTGTTTCATCACAGAAGTGCCAATTCAATGAAAAGTGTGGTGAAGGTGATGCAACTTTTGTAGAGCAGAATATTGATGATGTTAGTTATATCTACAATGAGGTGGAAGATAGTGAGAAATTGTTGTTTTCCAATGTTGGTAGTGTTAATGGATTTTGGGAAGAAAATCCATTGGATTATGTGGTGTAG 774 0.3579 MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKHGTGGNWITLPKRVGLTRCGKSCRLRWLNYLRPNINHGEFSDSEDKIICTLFASIGSRWSIIASKLQGRTDNDVKNYWNAKLKKKFMFINHSVEMKSQQVSLLSILQNSTSTSTSPSLSFIESKNSSYYHHHSNGSFTSSFSNSSTLSSLLSENSSTSGAQESFIVSSQKCQFNEKCGEGDATFVEQNIDDVSYIYNEVEDSEKLLFSNVGSVNGFWEENPLDYVV 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04307 257 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Trre13g04307 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Trre13g04307 257 SMART sant 67 115 IPR001005 -
Trre13g04307 257 SMART sant 13 64 IPR001005 -
Trre13g04307 257 Gene3D - 70 135 - -
Trre13g04307 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Trre13g04307 257 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Trre13g04307 257 Gene3D - 7 68 - -
Trre13g04307 257 FunFam Transcription factor RAX3 7 68 - -
Trre13g04307 257 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Trre13g04307 257 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Trre13g04307 257 CDD SANT 70 110 IPR001005 -
Trre13g04307 257 CDD SANT 16 62 IPR001005 -
Trre13g04307 257 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Trre13g04307 257 PANTHER OS09G0431300 PROTEIN 1 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04307 Trre-Chr13 50722462 50723960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04307 1 118 MYB Transcription Factor Family AT2G36890 81.356 7.84e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre13g04307 Myb_DNA-binding 4.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04307 K09422 - gmx:778084 290.426