Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04304 ATGTCAAAAGAATCTGAAGAAATTAAAACTAGTAGTACTGAGCAATGGAAATGGTCTGAAATGCAAGGTCTTGAGCTTGTGAATGAAGATAACAATAGTTATGACCCTTTTAAAGGGAACCTACCAACAGTAATAGAAGAGGGTCAAGTTTCAATGGTGGAAACATCAGGTGGTAGTGGAAAAGAAGAGAAGGTTGTTAAGAGTGTTCCTACTGTTGGGTTTGGAGAGTTATTCAGATTTGCTGATGGATTGGATTATATTTTAATGACTATTGGAACTGTTGGAGCAATTGTTCATGGTTGTTCTTTGCCTATTTTTCTTAGGTTCTTTGCTGATCTTGTTAACTCTTTTGGTTCCAATGCTAATAATTTGGACAAGATGACACAAGAAGTTGTTAAGTATGCATTTTACTTCCTTGTGGTAGGTGCTGCTATTTGGGCATCTTCATGGGCAGAGATTTCGTGTTGGATGTGGACCGGAGAGCGTCAATCAACTAAGATGAGGATCAAGTATCTGGAAGCTGCATTGAAACAAGACATTGAATTCTTCGACACTGAAGTTCGAACTTCCGATGTTGTTTTTGCTATTAACACTGATGCTGTGATGGTTCAGGATGCAATTAGTGAGAAGTTGGGAAATTTCATTCACTATATGGCTACTTTTGTTTCTGGTTTTGTTGTTGGATTCACTGCTGTTTGGCAATTGGCTTTGGTTACCCTTGCTGTTGTTCCTATGATAGCTGTTATTGGAGCCATTCACACCACTACTTTGGCTAAGCTCTCTAGTAAAAGCCAAGAAGCTCTTTCTCAAGCCGGCAACATTGTGGAACAGACGGTTGTGCAAATCCGTGTAGTGTTGGCTTTCGTTGGTGAGTCGCGAGCACTACAAGGCTACTCATCAGCCTTGAAGGTTGCTCAGAAGCTTGGCTACAAAACAGGATTAGCAAAGGGAATGGGATTAGGTGCAACTTACTTTGTTGTTTTCTGCTGCTACGCGCTTCTGTTGTGGTATGGAGGCTATCTTGTAAGGCATCACGAGACAAATGGAGGACTTGCCATTGCAACCATGTTTGCTGTCATGATTGGTGGAATAGGTTTGGGGCAATCTGCACCTAGCATGGCTGCATTTACAAAGGCGAGGGTTGCTGCGGCTAAGATTTTCCGGATAATTGATCACAGTCCTGGTATAGATAGAAACAGTGAATCAGGATTGGAATTGGAGACAATTACTGGACTTGTGGAACTTAAAAATGTCGACTTTTCTTATCCATCTAGGCCCGAGGTTCTGATCCTCAATGATTTCTCCTTGAGTGTTCCTGCCGGAAAGACCATAGCTTTAGTCGGTAGCAGTGGCTCTGGCAAGAGCACTGTTGTTTCCCTTATTGAGAGATTCTATGACCCAACTTCAGGACAAGTTATGCTAGATGGTCATGACATTAAAACTTTGAAGCTTAAATGGTTGAGGCAACAGATAGGACTAGTGAGTCAAGAGCCTGCTTTGTTCGCTACCACGATTCGAGAAAATATACTCTTGGGAAGGCCTGATGCAGACCAGGTAGAGATTGAAGAAGCTGCTAGGGTTGCTAATGCTCATTCGTTCATCATCAAACTTCCTGAAGGCTATGAAACTCAGGTAGGAGAAAGAGGGCTACAACTTTCTGGAGGGCAAAAACAAAGAATAGCAATAGCAAGGGCAATGTTAAAAAATCCAGCAATTCTTCTCCTAGATGAGGCAACAAGTGCATTGGACTCTGAATCAGAAAAACTGGTGCAAGAAGCACTTGACCGGTTCATGATTGGAAGAACGACTCTTGTAATTGCTCATCGCCTTTCCACAATTCGCAAAGCTGACCTCGTAGCCGTGATTCAACAAGGAAGTGTTTTTGAAATTGGAACTCATGATGAGTTATTCTCCAAAGGTGAAAATGGAGTCTATGCCAAGCTTATTAAGATGCAGGAGGTTGCCCATGAAACTGCTATGAATAATGCTAGAAAGAGTAGTGCAAGGCCTTCAAGTGCAAGAAACTCGGTTAGCTCGCCGATAATTGCTAGGAATTCTTCTTATGGACGGTCACCGTACTCACGTAGATTGTCCGATTTCTCTACATCAGATTTTAGTTTGTCCCTTGATGCATCATACCCAAATTACAAGCATGAAAAGCTTGCCTTCAAAGATCAAGCCGGTTCCTTCTGGAGACTAGTAAAAATGAACTCTCCTGAATGGCTCTATGCTTTAATTGGTTCAATTGGTTCAATTGTTTGTGGATCACTTAGTGCTTTCTTTGCTTATGTTCTTAGTGCTGTCCTCAGTGTCTATTACAATCCAGACCACAAACACATGATCCGAGAAATAGATAAGTACTGCTACTTGTTGATTGGTCTTTCATCAACTGCACTTATCTTCAACACATTGCAACACTTCTTCTGGGATATTGTTGGGGAAAATCTTACGAAACGTGTGAGGGAGAAAATGCTGACTGCAGTGCTTAAGAACGAAATGGCATGGTTTGATCAGGAGGAAAATGAGAGTGCTAGGATTTCTGCGAGGCTGGCTCTTGATGCCAATAATGTCAGATCAGCCATTGGAGATCGAATTTCGGTCATTGTGCAGAATACTGCACTTATGCTTGTTGCTTGTACTGCAGGTTTTGTGTTGCAGTGGCGTCTCGCCCTTGTCCTCATTGCTGTATTCCCTGTTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGACCTAGAAGCTGCTCATGCCAAGGCCACACAACTAGCAGGGGAAGCTATAGCCAATGTTAGAACTGTTGCAGCATTCAATTCAGAATCGAAAATTGTTAACCTGTTTGCTTCCAACCTTGAAACACCACTACAAAGGTGCTTTTGGAAGGGACAGATTTCCGGAAGCGGATATGGAATAGCTCAGTTTGCACTTTATGCTTCTTATGCACTTGGTCTTTGGTACGCTTCTTGGCTAGTGAAACATGGAATATCCGACTTCTCTAAAACAATCCGAGTTTTCATGGTCCTCATGGTCTCTGCCAATGGTGCTGCCGAGACTTTAACACTGGCTCCTGACTTCATCAAGGGAGGTAGAGCCATGAGATCAGTCTTTGATCTCCTCGACCGTCGAACCGAGATTGAACCAGATGATCAAGATGCTACTCCTGTTCCTGATCATCTCCGCGGTGAGGTTGAACTAAAGCATGTGGACTTTTCTTATCCCACTAGACCAGATATGCCGGTTTTCCGTGACCTTAATCTTCGTATCCGAGCTGGCAAAACTCTTGCCCTTGTTGGACCTAGTGGCTGCGGTAAGAGCTCAGTGATTGCACTTATACAGAGATTCTATGATCCAACATCTGGCCGGGTAATGATTGATGGGAAAGACATCAGAAAATACAACCTCAAGTCCTTAAGAAGACACATTTCTGTAGTACCTCAAGAGCCATGCCTCTTTGCTACTACGATTTATGAAAACATTGCATATGGCCATGACTCAGCAACAGAAGCCGAGATAATCGAAGCCGCAACACTTGCTAACGCTCACAAGTTCATATCTTCTCAACCGGACGGATACAAAACATTTGTAGGGGAGAGAGGCATTCAACTCTCCGGGGGACAAAAACAAAGAATAGCAGTTGCTCGCGCTTTTTTGAGGAAAGCCGAGCTTATGCTTCTTGACGAGGCAACAAGTGCACTTGATGCTGAGTCAGAGAGGTCTGTTCAAGAGGCTTTAGACCGCGCTTCAACGGGAAAAACAACCATCATTGTTGCACATAGGTTATCAACCATAAGGAATGCCAATGTGATCGCTGTGATTGATGATGGTAAAGTAGCTGAACAAGGTTCACATTCGCAGTTGATGAAAAATCACCAAGACGGAATATATGCGCGCATGATTCAATTACAAAGGTTTACACACAATGAGGTAATTGGTATGGCATCTGGTTCAACTTCTTCAACATGA 3978 0.4291 MSKESEEIKTSSTEQWKWSEMQGLELVNEDNNSYDPFKGNLPTVIEEGQVSMVETSGGSGKEEKVVKSVPTVGFGELFRFADGLDYILMTIGTVGAIVHGCSLPIFLRFFADLVNSFGSNANNLDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALKQDIEFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGAIHTTTLAKLSSKSQEALSQAGNIVEQTVVQIRVVLAFVGESRALQGYSSALKVAQKLGYKTGLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHETNGGLAIATMFAVMIGGIGLGQSAPSMAAFTKARVAAAKIFRIIDHSPGIDRNSESGLELETITGLVELKNVDFSYPSRPEVLILNDFSLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVMLDGHDIKTLKLKWLRQQIGLVSQEPALFATTIRENILLGRPDADQVEIEEAARVANAHSFIIKLPEGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVIQQGSVFEIGTHDELFSKGENGVYAKLIKMQEVAHETAMNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASYPNYKHEKLAFKDQAGSFWRLVKMNSPEWLYALIGSIGSIVCGSLSAFFAYVLSAVLSVYYNPDHKHMIREIDKYCYLLIGLSSTALIFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARISARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSESKIVNLFASNLETPLQRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRRTEIEPDDQDATPVPDHLRGEVELKHVDFSYPTRPDMPVFRDLNLRIRAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHDSATEAEIIEAATLANAHKFISSQPDGYKTFVGERGIQLSGGQKQRIAVARAFLRKAELMLLDEATSALDAESERSVQEALDRASTGKTTIIVAHRLSTIRNANVIAVIDDGKVAEQGSHSQLMKNHQDGIYARMIQLQRFTHNEVIGMASGSTSST 1325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04304 1325 Gene3D ABC transporter type 1, transmembrane domain 76 665 IPR036640 GO:0005524|GO:0016020
Trre13g04304 1325 FunFam ABC transporter B family member 1 403 653 - -
Trre13g04304 1325 SUPERFAMILY ABC transporter transmembrane region 732 1052 IPR036640 GO:0005524|GO:0016020
Trre13g04304 1325 FunFam ABC transporter B family member 1 1058 1308 - -
Trre13g04304 1325 SUPERFAMILY ABC transporter transmembrane region 77 394 IPR036640 GO:0005524|GO:0016020
Trre13g04304 1325 CDD ABC_MTABC3_MDL1_MDL2 1068 1307 - -
Trre13g04304 1325 CDD ABC_6TM_Pgp_ABCB1_D1_like 89 386 - -
Trre13g04304 1325 FunFam ABC transporter B family member 1 724 1033 - -
Trre13g04304 1325 FunFam ABC transporter B family member 1 76 411 - -
Trre13g04304 1325 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1068 1304 IPR003439 GO:0005524
Trre13g04304 1325 PANTHER ABC TRANSPORTER B FAMILY 58 798 IPR039421 -
Trre13g04304 1325 ProSitePatterns ABC transporters family signature. 552 566 IPR017871 GO:0005524|GO:0016887
Trre13g04304 1325 CDD ABC_6TM_Pgp_ABCB1_D2_like 735 1050 - -
Trre13g04304 1325 SMART AAA_5 440 626 IPR003593 GO:0016887
Trre13g04304 1325 SMART AAA_5 1095 1287 IPR003593 GO:0016887
Trre13g04304 1325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1059 1307 IPR027417 -
Trre13g04304 1325 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 745 1032 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g04304 1325 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 413 649 IPR003439 GO:0005524
Trre13g04304 1325 ProSitePatterns ABC transporters family signature. 1207 1221 IPR017871 GO:0005524|GO:0016887
Trre13g04304 1325 Gene3D - 403 653 IPR027417 -
Trre13g04304 1325 Gene3D - 1057 1308 IPR027417 -
Trre13g04304 1325 FunFam ABC transporter B family member 19 1034 1056 - -
Trre13g04304 1325 Pfam ABC transporter 1087 1235 IPR003439 GO:0005524
Trre13g04304 1325 CDD ABC_MTABC3_MDL1_MDL2 413 652 - -
Trre13g04304 1325 Pfam ABC transporter transmembrane region 89 362 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g04304 1325 Pfam ABC transporter transmembrane region 746 1015 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g04304 1325 Pfam ABC transporter 431 580 IPR003439 GO:0005524
Trre13g04304 1325 Gene3D ABC transporter type 1, transmembrane domain 725 1033 IPR036640 GO:0005524|GO:0016020
Trre13g04304 1325 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 91 378 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g04304 1325 Gene3D ABC transporter type 1, transmembrane domain 1034 1309 IPR036640 GO:0005524|GO:0016020
Trre13g04304 1325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 404 652 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04304 Trre-Chr13 50640710 50646653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04304 91 669 Calmodulin-binding Proteins AT2G36910 39.243 2.98e-119 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04304 K05658 - gmx:100814667 2321.58