Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04293 ATGGAGGTTACAAAGAAGTTGAAGATAAAGTCTTTGATATCAAAGGTGTTAAAGGGTCTTCAATTCTTGGAAATTAGTAAAGCATGTACAAGAAGAGGTAATTATGTGAGAATTAGAGATATTGATGATAATGAGAGTGAAAATGCAATAATAGTTCCTCAAGGTTATTTTGCAGTTATAGCAATGCAAGGTGAAGAACCAAAGAGATTTATTCTTGAGTTGGAATATTTAAGGGATCGTCATTTTATGAAACTATTGGAACAAGCTAAGGAAGAATTTGGATATGAACAAAAGGGTGCTCTTGCATTGCCATGTAGGCCTCAAGATCTTCAAAAGATTATAGAGAATCGACATAATACAACTTTGTAA 369 0.3279 MEVTKKLKIKSLISKVLKGLQFLEISKACTRRGNYVRIRDIDDNESENAIIVPQGYFAVIAMQGEEPKRFILELEYLRDRHFMKLLEQAKEEFGYEQKGALALPCRPQDLQKIIENRHNTTL 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04293 122 Pfam Auxin responsive protein 43 114 IPR003676 GO:0009733
Trre13g04293 122 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 33 113 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04293 Trre-Chr13 50564059 50564427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04293 4 105 Calmodulin-binding Proteins AT5G20810 37.736 7.81e-12 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04293 - K14488 gmx:100794597 118.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04293 13 50564059 50564427 Trre13g04293 13 50564059 50564427 ECH
Trre13g04293 13 50564059 50564427 Trre1g02573 1 20974203 20974505 PCT