Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04283 ATGATACAGTTATTTGATGCAATTGTGACTGGTATTATGAAGTGCTTTCCATTCCACTCTGGAGATAAGAAAGATGAACCGAAAGGCTTACAATCCGCGTCGGGCCGTTCAGAAAGTTCCACATATGTTGATGCTGAAGGTAAAAGGTTTAGTTCTGAATTGAATTCTCAGGATGTCTCAGATAGTGGCAGCGTGGAATCCCACAGGAGGAACGCGCCTCCCGATATGTCCCAAAGACCTAGCAACCTTAGAGTGTTTACTGTATCTGAACTGAAATCAGCCACAAAGAATTTCAGTCGATCAGTTATGCTTGGAGAGGGTGGATTTGGGTGTGTCTATCAGGGAGTAATTAGAAGCGTAGACGATCCATCTAGAAGAATTGAGGTTGCGGTTAAACAACTTAGTAAAAGAGGAGTGCAGGGGCACAGGGAATGGGTGACGGAAGTGAATGTTCTCGGCATTGTTGAGCATCCCAATCTTGTGAAACTAGTGGGCTACTGCGCCGATGATGACGAAAGAGGTATCCAGCGGCTTCTGATATATGAATACATGCCAAACAGAAGCGTGGAGCACCATTTATCTCACCGAGCAGTGACTCCTCTCCCGTGGAGTAGGAGAATAAAAATAGCACAAGACGCTGCTCGTGGATTAACATACCTGCACGAGGAAATGGATTTTCAGATAATTTTCAGAGATTTCAAATCTTCAAACATCCTTCTGGATGATCAATGGAATGCAAAGCTATCGGACTTTGGGTTAGCAAGACTCGGACCATCAGATGGACTAACCCATGTCTCAACAGCGGTTGTAGGAACAATGGGGTACGCAGCTCCTGAGTATCTCCAAACCGGACGTCTCACATCAAAGAATGACGTATGGAGCTACGGTGTTTTCCTTTATGAACTCATTACTGGCAGGCGCCCTTTAGATCGAAATCTTCCTAGGGGTGAACAGAAGCTGTTGGAATGGATAAAACCATACCTATCAGATGCAAAGAAATTTCAACTTATATTGGATCCAAGACTTGATAAGAAACAAGTAATCAAATCAGCCCAAAAACTTTCTACGGTAGCTAACCGATGCTTAGTTAAAAATCCAAAGAGTCGCCCAAAAATGAGTGAAGTTTTGCAAATGGTGAATGGAATAATAGAATCATCATCCAGTGATAATTCAAATATACCATCGAAGAATGTGTCGAGAGTAGAAGTTTTACACGACGCTGAAATAAACAAGAAACGGACTATGGATCAGAAGCCTGGAGAAAGTAATTGGTTTGTTAGGATGTGGAGACCAAAGCTTGTAAGAACATGTTAA 1314 0.4269 MIQLFDAIVTGIMKCFPFHSGDKKDEPKGLQSASGRSESSTYVDAEGKRFSSELNSQDVSDSGSVESHRRNAPPDMSQRPSNLRVFTVSELKSATKNFSRSVMLGEGGFGCVYQGVIRSVDDPSRRIEVAVKQLSKRGVQGHREWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYEYMPNRSVEHHLSHRAVTPLPWSRRIKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDDQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYLQTGRLTSKNDVWSYGVFLYELITGRRPLDRNLPRGEQKLLEWIKPYLSDAKKFQLILDPRLDKKQVIKSAQKLSTVANRCLVKNPKSRPKMSEVLQMVNGIIESSSSDNSNIPSKNVSRVEVLHDAEINKKRTMDQKPGESNWFVRMWRPKLVRTC 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04283 437 MobiDBLite consensus disorder prediction 32 62 - -
Trre13g04283 437 CDD STKc_IRAK 104 382 - -
Trre13g04283 437 FunFam Serine/threonine-protein kinase BIK1 65 183 - -
Trre13g04283 437 ProSitePatterns Protein kinases ATP-binding region signature. 104 132 IPR017441 GO:0005524
Trre13g04283 437 ProSiteProfiles Protein kinase domain profile. 98 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04283 437 SUPERFAMILY Protein kinase-like (PK-like) 73 379 IPR011009 -
Trre13g04283 437 Gene3D Transferase(Phosphotransferase) domain 1 184 406 - -
Trre13g04283 437 Pfam Protein kinase domain 100 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04283 437 Gene3D Phosphorylase Kinase; domain 1 69 183 - -
Trre13g04283 437 PANTHER OS01G0588500 PROTEIN-RELATED 60 381 - -
Trre13g04283 437 MobiDBLite consensus disorder prediction 23 82 - -
Trre13g04283 437 FunFam Serine/threonine-protein kinase PCRK2 184 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04283 Trre-Chr13 50475345 50477697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04283 13 394 Glycoside Hydrolase AT3G07070 40.155 4.19e-88 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre13g04283 Pkinase 5.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04283 - - gsj:114400704 736.873