Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04281 ATGGCACATTATGGATTGCTTCATGATCAAGAAAACACATATATAGGTTACAATGGAAATGAATGGAATGAAGATGAAGACCTTGTTGATAAAAGAGATTCTTTAGCACCCTCATTTTACACACAAGAAATCTACAAAGAGCTTCAAGGTCTTACTACCACTTTAACAAGAGATATCAAGAAAGATTTAGGTTTCTGCATAAAGGATGTGAATAAAGATTGGGAGGAAGCCTTTAATTTTAATGGAAGGTTAGATTTTGTGGAAGCTTGTGTTAAGCAAAAAGGTGATTTTAGAGATAGAATTTGTACAACTGCTGAAATAAGGTACTACTTTCAGAGTTTTTTCCTAGAAGGAGGCTCGTCTGCAAGTTACGTAAAACCGAACCAAAATTGCAACTTGACTTCATGGGTTTCTGGTTGTGAACCTGGTTGGAGTTGTAATGTTGATGACAAAATTGACCTCAAAAAGGATATAAAAGACATTCCTTCAAGAATTAAAGATTGTCAACCTTGTTGTGAAGGGTTTTTCTGTCCTCAAGGATTAACTTGCATGATAACATGTCCACTTGGTTCTTATTGTCCACTTGCAAAATTGAATGAAACAACCGGAGTATGTGATCCATATAGTTACCAAATTCCTGCAGGAGAAACAGACCATACTTGTGGTAGTGCTGATGTTTGGTCCGGTGTTGTCAACAATAGTGACATCTTTTGTTCTCCAGGATCATATTGTCCATCTCCGATACGCAAAGTTTCTTGCGATAAAGGATATTACTGCAGGACGGGTTCAACTCATCAAAATCGATGCTCCAGGTTGAGTAGCTGTAATCCAAACACGTCAACCCAAAACATGCATGCTTACGGCGGTTTGATTATTGTTGCTATGAGTACTCTTCTGATCTTCATTTATAACTTTTCTGATCAAGTGCTAGCTACAAGAGAAAGACGGAAAGCTAAATCAAGAGAAGCTGCAGCGAAACATGTAAGAGAACACGTACAAGCTCGCGAAAGATGGAGAGCAGCTAAAGAATTGGCTAAGAAAAGTTCAACAGGATTGCAAAAACAGTTGTCTCGAACCTTTTCGCGCAAGAAATCAAGTAAGCCAGGAGACTTATTTTCTCCAACGCCTCCGGATTCATCAAGCAAACCCGAGCAATCATCGAATGCCAAAAATAAGGAGCCTAGCAATCTTACTAAAATGATGAATTCCATTGAGGATGATGAACATGAAGGATTTGATTTTCAGATTGGTGACAAGAACATTAAAAAGCAAATGCCAAAGGGAAAAAATTTACACACTCATAGCCAAATTTTAAGGTATGCTTATGGTCAAATTGAGAAGGAGAAAGCTCAGCAAGAGCAAAACAAGAACATGACATTCTCAGGAGTAATATCAATGGCTGCTGAAGGTGGGGAAGTAAACACAAGACCTTCTATTGAGGTAGCTTTTAATAATCTAACCCTAACTTTGAAGGGTAAAAACAAACATGTACTTAGGTGTGTGAGTGGTAAAATCATGCCTGGTCGAGTTTCGGCTGTTATGGGACCTTCAGGAGCCGGAAAAACTACATTTCTTTCAGCTTTGGCAGGAAAATCAAGAGGATGCAATATCTCAGGCTCAATTTTAATTAATGGAAAAAATGAATCCATTCACTCTTATAAGAAAATTACTGGTTTTGTGCCACAAGATGATATTGTGCATGGTAACTTGACAGTAGAGGAAAATCTTCGTTTCAGCGCAAGATGCAGGCTCCCTGCAGACATGCCGAAACCAGATAAGGTTCTGATTGTTGAAAGAGTGATCGAGTCCTTAGGACTACAGCCAGTAAGGGATTCTCTAGTTGGGACAATAGAGAAGAGAGGCATATCCGGAGGGCAAAGAAAACGTGTAAATGTAGGACTAGAGATGGTGATGGAACCTTCATTATTAATCTTAGACGAGCCTACAACTGGTTTAGACAGCGCATCTTCTAGTTTACTTCTTAAAGCACTTCGCCGTGAAGCTCTTGAAGGTGTAAATATCTGCATGGTACTTCACCAACCAAGTTATACTTTGTTTAGAATGTTTGATGATATAGTATTTCTAGCAAAAGGTGGTCTTACAGCATATCATGGTCCAGTGAAAAAAGTAGAAGAATACTTTGCTGGCATTGGAATTCCAGTACCGGATCGCGTAAATCCTCCTGACCATTTCATTGATATTCTTGAAGGTTTAGAGAAACCAACTTCAGGTGTAACTGTTGAAACACTTCCTATTAGATGGATGCTTCATAATGGATATCCAGTACCACCAGATATGCTTCATTTGGCTGATCAAATTGCTGCTCCTTCATCTTCTGCCACAAATGTAACGCATACCTCAAAGGGTACCGAGGAAACTTCCGATCAATCATTTTTTGTTGAGCTTTGGGAGGATTTGAAGAGCAATATTAGGACACAAATAGATCATATAGAAGCAATCTTCTCGAGAACAAAAGACTTATCTGACCGAAAGACTCCTAATGTAGCTCGACAATATAGATACTTCCTTGGCCGGGTTGGCAAACAACAGCTTAGAGAAGCAAAATTACAAGCAGTCGATTATCTCCTTTTATTGGTCGCCGGCGCTATCTTAGGAACACTTACCAAAGTAAACGATGAAACATTTGGTTCACTTGGCTATACATATACAGTCATTTCTGTTTCTCTACTATGCAAGATTGCAGCTCTTAGATCATTTACTATGGACAAGTTACAATACTGGAGGGAAAGTGCGTCCGGGATAAGCAGTCTAGCACATTTTCTCTCAAAAGATACAATTGATCTTTTCAGCACAATCACCAAACCTATAGTTTATCTGTCCATGTTCTATTATTTAAGTAATCCAAGGTCTAGCTTTGAAAGTAATTATATAGTTTTGGTTTGTTTGGTGTATTGTGTCACCGGCATGGCTTACGCATTAGCCATCTTCTTCCAGCCGAGTCCTGCTCAGCTGTGGTCAGTGCTTCTTCCTGTTGTTATGACTCTCATTGCCAACCAGAATAGAGACACTGCATTTATGAAGATCCTAGTACAATTGTGCTATCCAAAATGGGCTTTGGAGGCTTTTATCATTGCAAATGCTGAAAGGTACACCGGAGTATGGTTGATAACTCGTTGTAGTTCATTGATGAATAGTGGTTACGATGTCAATCAATGGCATATTTCTCTACTTGTGCTCATTTTAAATGGAATAATTGCCCGAATTGTAGCCTTCTTTGGTTTGGTAATGTCGCAAAAGAGGTGA 3264 0.3897 MAHYGLLHDQENTYIGYNGNEWNEDEDLVDKRDSLAPSFYTQEIYKELQGLTTTLTRDIKKDLGFCIKDVNKDWEEAFNFNGRLDFVEACVKQKGDFRDRICTTAEIRYYFQSFFLEGGSSASYVKPNQNCNLTSWVSGCEPGWSCNVDDKIDLKKDIKDIPSRIKDCQPCCEGFFCPQGLTCMITCPLGSYCPLAKLNETTGVCDPYSYQIPAGETDHTCGSADVWSGVVNNSDIFCSPGSYCPSPIRKVSCDKGYYCRTGSTHQNRCSRLSSCNPNTSTQNMHAYGGLIIVAMSTLLIFIYNFSDQVLATRERRKAKSREAAAKHVREHVQARERWRAAKELAKKSSTGLQKQLSRTFSRKKSSKPGDLFSPTPPDSSSKPEQSSNAKNKEPSNLTKMMNSIEDDEHEGFDFQIGDKNIKKQMPKGKNLHTHSQILRYAYGQIEKEKAQQEQNKNMTFSGVISMAAEGGEVNTRPSIEVAFNNLTLTLKGKNKHVLRCVSGKIMPGRVSAVMGPSGAGKTTFLSALAGKSRGCNISGSILINGKNESIHSYKKITGFVPQDDIVHGNLTVEENLRFSARCRLPADMPKPDKVLIVERVIESLGLQPVRDSLVGTIEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTTGLDSASSSLLLKALRREALEGVNICMVLHQPSYTLFRMFDDIVFLAKGGLTAYHGPVKKVEEYFAGIGIPVPDRVNPPDHFIDILEGLEKPTSGVTVETLPIRWMLHNGYPVPPDMLHLADQIAAPSSSATNVTHTSKGTEETSDQSFFVELWEDLKSNIRTQIDHIEAIFSRTKDLSDRKTPNVARQYRYFLGRVGKQQLREAKLQAVDYLLLLVAGAILGTLTKVNDETFGSLGYTYTVISVSLLCKIAALRSFTMDKLQYWRESASGISSLAHFLSKDTIDLFSTITKPIVYLSMFYYLSNPRSSFESNYIVLVCLVYCVTGMAYALAIFFQPSPAQLWSVLLPVVMTLIANQNRDTAFMKILVQLCYPKWALEAFIIANAERYTGVWLITRCSSLMNSGYDVNQWHISLLVLILNGIIARIVAFFGLVMSQKR 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04281 1087 Pfam ABC-2 type transporter 679 1086 IPR043926 GO:0140359
Trre13g04281 1087 FunFam ABC transporter G family member 24 475 717 - -
Trre13g04281 1087 ProSitePatterns ABC transporters family signature. 622 636 IPR017871 GO:0005524|GO:0016887
Trre13g04281 1087 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 481 722 IPR003439 GO:0005524
Trre13g04281 1087 Gene3D - 472 716 IPR027417 -
Trre13g04281 1087 MobiDBLite consensus disorder prediction 342 397 - -
Trre13g04281 1087 Pfam ABC transporter 500 649 IPR003439 GO:0005524
Trre13g04281 1087 SMART AAA_5 507 699 IPR003593 GO:0016887
Trre13g04281 1087 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 441 1074 - -
Trre13g04281 1087 CDD ABCG_EPDR 478 705 - -
Trre13g04281 1087 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 704 IPR027417 -
Trre13g04281 1087 MobiDBLite consensus disorder prediction 366 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04281 Trre-Chr13 50463290 50468454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04281 500 701 Calmodulin-binding Proteins AT2G36910 28.571 9.74e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04281 - - lang:109333797 1725.68