Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04274 ATGAAAGCTCGGAATCTTGTTGCTGATGATGGAAGGGATTCCTATACAAGGCATGGCAAAGTTTTGACTAAAGAATATAAAGATAACACAAGGGTTGATCATCGTGGGGAAAATAGAAAAGGTGACGGAGAAGTTGTATGTCACAAGTGCTTGGATGGAGGAACACTCTTGTGCTGTTGTGGTAAAGGGTGTAAAAGGAGGTATCACCCGACTTGTTTGGACCCTCCTCTCAAATCGCTTCCCATAGGGTTTTGGCATTGTATTCGGTGTGTGAAGAAAAAGTTAGAGCTTGGGGTTCATTCTGTTTCTGAAGGGGTAGAATCCATATGGGATTCCCGAGAAGTGGTTTCAAAAGATGAAGTGATCCAAAGAGAGTACTTTGTCAAGTATCAGGGCCTCGCTCATGCTCACAACTGTTGGATTCCAGAAAAGCAAATGCTTACTGAGGCTCCAAAGCTTTTGGAAAAATATAAGAAGAAACAACAGGTTGTCAGGTGGAAAAAAGATTGGAGTATACCTCACCGGTTGCTGCTAAAAAGAAAAATTATCTTGTCAAAGCTAAATGCTCACCGTTTTGATGGAAGTAATGACAATGATTCAGTTTGCCAATATGAATGGCTTGTGAAATGGACTGGTCTTGGTTATGATCATGTTACATGGGAGTTAGATGATGCTATATTTATGAAATCATCTAAAGGGATTAAACTCATGGACAATTATGAAAGTCGTCAAAAGAGATCAGATGGGCTGTCAAATCCTCTTGAAGTTAAGGAGGAGAGAGAAGATTCCTTTACCGAATTATCAGAGCTATCATCTGGAGATTCATCAGGATTGTATAACCAGCAATTGAGTTATGTGAACAAGCTTCACACGTGTTGGCACAAAGGTCAGAGTGCTGTTATTGTTGATGAACAAATTGACCAGGAGCGGGTTAGGAAGATGATTTTGTTTATATTATCTTTGAATTGTAATGTGAAAAGGCCTTTTCTCATCATCTCAACTTCTACTGGCCTTTCTGCATGGGAAACAGAATTCTTATATTTGGCACCATCTGCCAATCTCGTAGTTTACCAGGGAGAAAAAGATATACGCAGTAGCATCAGATCATTAGAATTTTACAATGAAGATGGTGGTGTTTTATTTCAAATATTGCTCTCATCATCTGAAATTGTCATTGAGGACTTAGATGAACTGCGATGCATTAAATGGGAAGCAATCATAATTGATGAATGCCAGCGGCGACCCAGAATTTTAGGAAACATTGACAATGTCAATATTCTAGCAGCTGAGATAAGGCTCCTTCTCGTTAGTGGACAAATCAAGGAAGATCGAGCTGACTATATCAAACTGCTTTCTTTACTTAAGTCTGGACATGATGAGTTGCATTTCTCATCTGCAAGTGTCTCCAATTTGAAGAGTCAATTGGAACAATATATTGCATTTAAGTGCAATTCTGACTCCAGCAGGTTTATAGAGTATTGGGTTCCTGCCCAGCTTTCCAGTTTGCAGCTTGAGCAGTATTGTTCAATGCTGCTTTCAAACTCATTGTCGTTATGCTCAGGCCAGAAGTCTTCCTTCGTTGATGCCCTCCGTGAGCTTACTATCTCAACAAGGAAGTGCTGCAACCATCCTTATCTCCTCGACCCGTCACCGAGTACTTTTGTCACTAGAGGTCTGCCTGTTGAAGAACATTTTGATATTGGAATAAAAGCAAGTGGAAAACTGCAACTTCTCGAAAAGATCCTTTTTGAAGCTAAACGTCGTGAGCTAAGAGTGATAATATTATTTCAGTCTAGTGGTGGTTCTAGATCAATTGGAGATATTTTGGATGATGTTCTCTGTCATAAATTTGGAAAGGACTGCTATGTACGATATGGTTGGGGTTACATTCCTTGTAAGAATCAAGATGCTTTGGAAACATTTAACGACAGAGAAAGTGGAAAATTTGTTTTCTTGATAGAGAGCCGTGCTTGTCATCCTAGTATTAAGCTGTCATCTGTGGATATTATTATATCATTTGACAGTGGTTTGGACCTGCAAAATGACCTCAAATGCATACAAAAAATGTCTATCAGCTCAAAGTTCAAAAAGATAACAGTTTTGAGATTGTACTCATGCTTCACTGTTGAAGAAAAGGTTTTAATGCTTGCAAAAGAGCGTATAGCTCTTGTATCCAATAAACGAAAGAAAGAGGGTGCTCTTGACAACAATATGCGGTTAGTTAACCAGAGTACACATCACACCCTGCTAAAATGGGGGGCCTCTTATCTATTCAGTAAGCTTGATGACTTACATGGAAGTGGCACCTCAGTTTCTGCTTCAGACATCTCCAATCAGTCAATTCTAAATGATGTAATCTGTGAATTATCATCCAAATTGGTTTGTGATAGCGGTGGCACTGATTCTCACAGACAGTCATTCATATCGAGAGTAGAACAGAATGGAGAGGAATATGTATGGAACATTTCATTGCCAGGAGAAAGAGAAATGAAGAAATTGGGCAATGAAACACATACTTTTTCCTGGAGTGATCTCCTCAAAGGAAGGAATCCTCGCTGGAAGTTTTTACCTGCTTCGTCTCAAAGGAACAGAAAAACAGTTGAATATGTTCATCACACAGTAAAAGGACCAGAAAAAGAAAATGATGCCATTATAAGAAAGAAAAGGACAAAGTCCATGGATAGTATTTATCCCATAGGAAAGAACGCGTCCAAGGATAATGTAGATCCCGAGGTAAGGAAAATCACCAAGGATAATGTTGACCCCAAACGAAGGAAGGTGTCCAAGGAAATTATTGATTCCAAGGGAAGGAACGTGTCTACGGATGTTGCTGATTCCAAACATCTGAAAAAAAAGTGGAAGAATAAGAAGAGTGGAAGTGCTGATAAAAGCAAAAGCAAATTGAATGGAGCAGCTGCAATAACTAAACAAATTCCAAAACAAAAGAAACTGCCGGACATGCCCAAGAGCAACAAACTCCTGTCAAAGCCTGATATATCTATATCATGTCTCTGTGATGTTCTACACTTTTCGAAAAATGACAAGGTTGTCACCATGAAGATTCTTGAGTATGTATTCGAACATTACGACATTGATTGCCTGGAAGATTCTACAGTGCAGGCATTTGAAATATCTGTGTGTTGGCTAGCAGCTTCTTTTTTGAAACACAAGATTGATAGGAAACATTCACTTGATCTTGCAAAAAGGCACTTGAATTTCAATTGCACGGAGGAAGAAGCCACCGATGTTTACAATTCACTGCAAGAGTGTAAGGAACACATTTCAAGATGTTTACAAAATGAACTTTGTGTTGAGGAAAATAATATAAATGGTGCTTCAAGCTCCATGACACCTGAGCTGCAACATTCAGCAGAGGAGGAGAAGCAAAAGGGTTTTCAGCATCCAAGTGTTTCAAATCTTGTGAAATCTGCCACAAATGAACCCGATCTTCCAAGAAAATCTCCCACAACAGTGCTATTTTCACAAGACCAGATTTATACAGAAAACTTCCAGAACGAACCTTATATGGCTCAAGAAATTTCTACATCTCAAACGACCCCTGGTAGTATGCCTGTGGAAGCAGATGCTACTTCAATGGAATCTGGTGCAGATGAGAGAATAAATGCCGTGAACTCGGCAGTAGCTGAAGTTTCACACCTCGAGCACTGGAATATTTCCCCCAATTCAAGTAATGATTTCAATAATGTCAATCCTGTAACAGGTTCTTTGGAAAGACAGAGTCCCATTTTAGGTTCAGATATTACACAATCTGATATGAGAGTTTTTGAAGATCCTCAAACTTTAATGAATCAAGTAATTGACACTGACAATTCTATGAATATATCAACTTATCTTGCACAACTTCACAATGTTGAGACAGATACTGTAACTTGTGATAGAACTGCTGTTCCCGAGGTCAGACAATGGTGCAATATAGTGAGTCCTGTATGTGGTGAGTCAACCACTTCAGAGTTTGCTGAGTGTCCTTTACCATATAGGCAACTATCACATGCAAATTTAATGCCATTGCGACAGTCATTGTCGGCTAGTCCATCTTTTATGGAGGACTTATCTCGTACAGTCATGCCACTAGACAGAGTTTCAAATCATAATTGTCTTCGTCGTGAGTCTGTAGAAATATTGCAAGCACTGTATGAACCTGTGGAACTGGTTGACTCTTCACCTGTGACATTGGAACCCTCCAGTTATGCGCCCGGGAATGAAAATGCTTCTCATGATCCTCACAACATTACTACTCCTGGTTATATGAACAGTGATCCTTTTCAAGCTCATTATTTGACATCTCAAATGCCCTATGTTGCCGACCCAAACACACTACTATTTGAAATGGAGCGAATACAAAAAATGAATGAAGAAGCTGTCAAGACCTATGAGGAAAAAAAATTGCAGCTGCTGTCTAACTACGAAAAGGAGGTTGAAATAATACGTGCAAAACACTATATGTTGCTTCAGAATGTTGATACTGCAGCAGCATTAGAGAAAAATGAACTTGAGGCACAAAGAGATATCGTATTCAGGAATATGATATTAGCTGACGTTTGGAGCCGAACTGATAGCATTTGCTAA 4587 0.3931 MKARNLVADDGRDSYTRHGKVLTKEYKDNTRVDHRGENRKGDGEVVCHKCLDGGTLLCCCGKGCKRRYHPTCLDPPLKSLPIGFWHCIRCVKKKLELGVHSVSEGVESIWDSREVVSKDEVIQREYFVKYQGLAHAHNCWIPEKQMLTEAPKLLEKYKKKQQVVRWKKDWSIPHRLLLKRKIILSKLNAHRFDGSNDNDSVCQYEWLVKWTGLGYDHVTWELDDAIFMKSSKGIKLMDNYESRQKRSDGLSNPLEVKEEREDSFTELSELSSGDSSGLYNQQLSYVNKLHTCWHKGQSAVIVDEQIDQERVRKMILFILSLNCNVKRPFLIISTSTGLSAWETEFLYLAPSANLVVYQGEKDIRSSIRSLEFYNEDGGVLFQILLSSSEIVIEDLDELRCIKWEAIIIDECQRRPRILGNIDNVNILAAEIRLLLVSGQIKEDRADYIKLLSLLKSGHDELHFSSASVSNLKSQLEQYIAFKCNSDSSRFIEYWVPAQLSSLQLEQYCSMLLSNSLSLCSGQKSSFVDALRELTISTRKCCNHPYLLDPSPSTFVTRGLPVEEHFDIGIKASGKLQLLEKILFEAKRRELRVIILFQSSGGSRSIGDILDDVLCHKFGKDCYVRYGWGYIPCKNQDALETFNDRESGKFVFLIESRACHPSIKLSSVDIIISFDSGLDLQNDLKCIQKMSISSKFKKITVLRLYSCFTVEEKVLMLAKERIALVSNKRKKEGALDNNMRLVNQSTHHTLLKWGASYLFSKLDDLHGSGTSVSASDISNQSILNDVICELSSKLVCDSGGTDSHRQSFISRVEQNGEEYVWNISLPGEREMKKLGNETHTFSWSDLLKGRNPRWKFLPASSQRNRKTVEYVHHTVKGPEKENDAIIRKKRTKSMDSIYPIGKNASKDNVDPEVRKITKDNVDPKRRKVSKEIIDSKGRNVSTDVADSKHLKKKWKNKKSGSADKSKSKLNGAAAITKQIPKQKKLPDMPKSNKLLSKPDISISCLCDVLHFSKNDKVVTMKILEYVFEHYDIDCLEDSTVQAFEISVCWLAASFLKHKIDRKHSLDLAKRHLNFNCTEEEATDVYNSLQECKEHISRCLQNELCVEENNINGASSSMTPELQHSAEEEKQKGFQHPSVSNLVKSATNEPDLPRKSPTTVLFSQDQIYTENFQNEPYMAQEISTSQTTPGSMPVEADATSMESGADERINAVNSAVAEVSHLEHWNISPNSSNDFNNVNPVTGSLERQSPILGSDITQSDMRVFEDPQTLMNQVIDTDNSMNISTYLAQLHNVETDTVTCDRTAVPEVRQWCNIVSPVCGESTTSEFAECPLPYRQLSHANLMPLRQSLSASPSFMEDLSRTVMPLDRVSNHNCLRRESVEILQALYEPVELVDSSPVTLEPSSYAPGNENASHDPHNITTPGYMNSDPFQAHYLTSQMPYVADPNTLLFEMERIQKMNEEAVKTYEEKKLQLLSNYEKEVEIIRAKHYMLLQNVDTAAALEKNELEAQRDIVFRNMILADVWSRTDSIC 1528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04274 1528 Pfam Chromo (CHRromatin Organisation MOdifier) domain 106 160 IPR023780 -
Trre13g04274 1528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 100 IPR013083 -
Trre13g04274 1528 Gene3D - 1443 1523 - -
Trre13g04274 1528 SMART chromo_7 169 245 IPR000953 -
Trre13g04274 1528 SMART chromo_7 103 162 IPR000953 -
Trre13g04274 1528 CDD PHD2_CHD_II 46 90 - -
Trre13g04274 1528 ProSitePatterns Zinc finger PHD-type signature. 47 90 IPR019786 -
Trre13g04274 1528 Gene3D - 105 163 - -
Trre13g04274 1528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 457 IPR027417 -
Trre13g04274 1528 ProSiteProfiles Chromo and chromo shadow domain profile. 104 169 IPR000953 -
Trre13g04274 1528 MobiDBLite consensus disorder prediction 916 949 - -
Trre13g04274 1528 Gene3D - 183 269 - -
Trre13g04274 1528 SUPERFAMILY Chromo domain-like 188 244 IPR016197 -
Trre13g04274 1528 Gene3D - 277 490 IPR038718 -
Trre13g04274 1528 SUPERFAMILY Chromo domain-like 63 163 IPR016197 -
Trre13g04274 1528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 754 IPR027417 -
Trre13g04274 1528 Gene3D - 491 723 IPR027417 -
Trre13g04274 1528 MobiDBLite consensus disorder prediction 1113 1134 - -
Trre13g04274 1528 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 64 1171 - -
Trre13g04274 1528 ProSiteProfiles Zinc finger PHD-type profile. 44 93 IPR019787 -
Trre13g04274 1528 MobiDBLite consensus disorder prediction 916 970 - -
Trre13g04274 1528 Coils Coil 1450 1470 - -
Trre13g04274 1528 ProSiteProfiles Chromo and chromo shadow domain profile. 177 252 IPR000953 -
Trre13g04274 1528 SMART PHD_3 46 91 IPR001965 -
Trre13g04274 1528 CDD CD_CSD 106 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04274 Trre-Chr13 50397450 50410114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04274 46 176 PHD Transcription Factor Family AT1G05380 29.197 1.46e-06 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre13g04274 SNF2_N 1.9e-06 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04274 - K11643 gmx:100813574 1543.87