Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04270 ATGAAAGCAAAAAGAAAAGGTGGCAATCTAGGTCTAACCGAGATGAATAAGGAGTCGAAGACGAAAATGAGAGATATGAACAGGGGTGTGGATCCTCAGCTATGGCATGCCATTGCTGGAGGAATGGTACAAATGCCAGAAGTTAACTCTAAGATCTTCTACTTCCCTCAAGGTCACGCCGAGCATGCATGTGAGCTAGTGAATTTCAGTGCTCATTCCATAATTCCACACAAAATTCCATCTTTAATTCCATGTAGAGTTGAATCTATCAAATATATGGCTGATCCTGAGACAGATGAGGTGTTTGCAAAACTACGGCTTGTTCCTCTACATATTAGTCAGGTTCGTTTTGACGATGATGATGGTGTTGGTAGTATCGGCGTGTCTGGAACTAAGGATAAACATCAATGTTTTGCGAAAACCTTGACACAATCTGATTCAAACAATGGTGGTGGATTTTCTTGTCCTAGATACTGTGCTGAGACTCTTTTTCCTAATTTAGACTATTCGGGTAATCCTCCTTCTCAGGACATTTATCCGAAAGATGTTCATGGCGAAACATGGCCTTTCAAACATGTTTATAGGGGTACACCGAGGCGGCATCTGTTGACAACTGGGTGGAGTCCTTTTGTTAGTGACAAGAAAATTGTTTCCGGGGATTCAATTGTGTTTGTGAAAACAGAAAACGGTGATCTTCATGTCGGACTTCGGAGGGCTAAAAGGAAAAGGGATGTTGGACCTGAGCCTTCGTCAGGGATGAAACGTGGCAGTGGTGGAATTGGAATTCATCCTGAATTACCTTACGGAGTATTTACATCGTATTCGGGAGAGGAAGATAATAAAGTTCGAAGAAATGGTAAAGGCAATGGATTGAGAATAAGTGATGGGATGATGGGTAGGGGGAAAGTAAAAGCTCAAGAAGTTATTGAAGCGGTAAAACGTGGTATCAATATGGAGCCGTTTGATGTGGTTTACTATCCTCGAGCAGGTACTCCTGAGTTCTTTGTGAAAATTTCTTTAATTGCAAAAGCACTTCAGATTAGGTGGTGTCATGGAATGAGATTCAAGATGGCCATTGAAACTGAGGACTCGACGAGGATAAGTTGGTTTGTCGGAACTGTTGTTTCTGTTCAGGCTTCTGATCCAGCATGGCCTGAATCTTTTTGGAGATTTCTCCAGGTTGAATGGGATGAACCGGAGTTACTCAAAAATGTGAAAAGGGTGAATCCGTGGCAAGTTGAAATAGTATCGAACATGCCTTCGATCCCTCTTTCCCCTTACGTACCACCAAGGAAGAAATTGAGATTGCCTCAACACCCAAATTACCCCCTTGATGGCCAATTTTCAATGCCAAGTTTTCCAAACAACTTTCTTAGTCCCAATATTCCAATTTTTCATTTACCCGAAATTACTCCTGTCGGCATGCAGGGAGCCAGGCATCCTCATTTCGGTTTTTCATCGTCAAACTTTCACCTCAATAAATTTCCATTAGGTCTCTTTAAGCCTAGTTTCCACCAACCGTTTAATCATACTGCTACAACATCGATGACAGTCCCTTATAACTCAGTTTTGCAAAAGCCAGCCACAAGTGATAATGCTTCGTGCTCGCTATCAATACCAACTTCTACACAATCATCAGAGAAATCAGACCCTGCGAAGCCCTCGCATCTCATGCTTTTTGGCCAAAAAATTACAATCGAGAACAAAAATTCTTCGGATACAACTGCAGATGCTGGAAATGAAAATATCGAGAAGAATATAACTAATAACTTTTCTGATCTTCATCTACAAGGCCTGCCAAAACGTTCCTCTAGTGATCGGTTCGAGTTGAATCATAAGAATTAA 1845 0.4152 MKAKRKGGNLGLTEMNKESKTKMRDMNRGVDPQLWHAIAGGMVQMPEVNSKIFYFPQGHAEHACELVNFSAHSIIPHKIPSLIPCRVESIKYMADPETDEVFAKLRLVPLHISQVRFDDDDGVGSIGVSGTKDKHQCFAKTLTQSDSNNGGGFSCPRYCAETLFPNLDYSGNPPSQDIYPKDVHGETWPFKHVYRGTPRRHLLTTGWSPFVSDKKIVSGDSIVFVKTENGDLHVGLRRAKRKRDVGPEPSSGMKRGSGGIGIHPELPYGVFTSYSGEEDNKVRRNGKGNGLRISDGMMGRGKVKAQEVIEAVKRGINMEPFDVVYYPRAGTPEFFVKISLIAKALQIRWCHGMRFKMAIETEDSTRISWFVGTVVSVQASDPAWPESFWRFLQVEWDEPELLKNVKRVNPWQVEIVSNMPSIPLSPYVPPRKKLRLPQHPNYPLDGQFSMPSFPNNFLSPNIPIFHLPEITPVGMQGARHPHFGFSSSNFHLNKFPLGLFKPSFHQPFNHTATTSMTVPYNSVLQKPATSDNASCSLSIPTSTQSSEKSDPAKPSHLMLFGQKITIENKNSSDTTADAGNENIEKNITNNFSDLHLQGLPKRSSSDRFELNHKN 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04270 614 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 28 593 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre13g04270 614 FunFam Auxin response factor 136 240 - -
Trre13g04270 614 Pfam B3 DNA binding domain 138 239 IPR003340 GO:0003677
Trre13g04270 614 Gene3D - 348 421 - -
Trre13g04270 614 MobiDBLite consensus disorder prediction 600 614 - -
Trre13g04270 614 CDD B3_DNA 137 238 IPR003340 GO:0003677
Trre13g04270 614 MobiDBLite consensus disorder prediction 531 554 - -
Trre13g04270 614 MobiDBLite consensus disorder prediction 594 614 - -
Trre13g04270 614 Gene3D - 136 240 IPR015300 -
Trre13g04270 614 SMART B3_2 138 240 IPR003340 GO:0003677
Trre13g04270 614 Pfam Auxin response factor 317 393 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre13g04270 614 FunFam Auxin response factor 349 421 - -
Trre13g04270 614 SUPERFAMILY DNA-binding pseudobarrel domain 133 241 IPR015300 -
Trre13g04270 614 ProSiteProfiles B3 DNA-binding domain profile. 138 240 IPR003340 GO:0003677
Trre13g04270 614 MobiDBLite consensus disorder prediction 238 258 - -
Trre13g04270 614 MobiDBLite consensus disorder prediction 531 551 - -
Trre13g04270 614 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04270 Trre-Chr13 50244158 50246153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04270 28 585 B3 DNA Binding Superfamily AT4G30080 50.000 4.34e-176 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre13g04270 B3 1.8e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04270 - - psat:127130059 791.186