Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04268 ATGGCAAAAGACTTTGAAACCGAACCTCAAGGTGGTGGTTTACCAAACAAGGACTACCAAGACCCACCACCAGCTCCACTCTTCGACACTACCGAATTCACCCAATGGTCCTTCTACAGAGCCCTCATCGCCGAATTCGTCGCCACCCTCCTCTTCCTCTACGTCACCATTTTAACCGTCATTGGTTACAACTCTCAAACTGACCCAGCTCATAACGGCACCCATTGTGACGGTGTCGGTATCCTCGGCATCGCTTGGGCCTTCGGTGGCATGATTTTTGTTCTCGTCTACTGCACTGCCGGCATATCAGGGGGGCACATAAATCCGGCGGTGACATTTGGGCTATTTCTAGCAAGGAAGGTATCATTGATAAGAGCTGTATTATACATGGTGGCACAGTGTTTAGGAGCAATATGTGGGGTTGGATTAGTAAAAGCTTTTCAGAAAAGTTACTATAACAGATACAAAGGTGGTGCTAACATGTTAAATGATGGTTATAGTAAAGGAACTGGTTTAGGTGCTGAGATTATTGGTACTTTTGTTCTTGTTTACACCGTTTTCTCTGCAACCGATCCAAAAAGAAGTGCTAGAGATTCTCATGTTCCTGTTTTAGCACCACTTCCAATTGGGTTTGCTGTGTTTATAGTTCACCTTGCTACAATTCCTATTACTGGAACTGGTATAAATCCTGCTAGAAGTTTTGGAGCTGCTGTGATTTACAACAATGAGAAAGCATGGGATGACCAATGGATTTTCTGGGTTGGACCCTTTATTGGTGCTGCCATTGCTGCAATTTATCACCAGTTTGTGTTGAGAGCACAAGCAGTTAAGGCTTTGGGTTCTTTCAGGAGTTCTTCAAATCTGTAA 867 0.4418 MAKDFETEPQGGGLPNKDYQDPPPAPLFDTTEFTQWSFYRALIAEFVATLLFLYVTILTVIGYNSQTDPAHNGTHCDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGLVKAFQKSYYNRYKGGANMLNDGYSKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFIGAAIAAIYHQFVLRAQAVKALGSFRSSSNL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04268 288 MobiDBLite consensus disorder prediction 1 22 - -
Trre13g04268 288 Pfam Major intrinsic protein 33 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g04268 288 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Trre13g04268 288 FunFam Probable aquaporin PIP1-2 25 286 - -
Trre13g04268 288 NCBIfam MIP family channel protein 44 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g04268 288 SUPERFAMILY Aquaporin-like 32 272 IPR023271 -
Trre13g04268 288 CDD MIP 40 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g04268 288 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g04268 288 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g04268 288 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g04268 288 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g04268 288 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g04268 288 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g04268 288 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 16 277 IPR034294 -
Trre13g04268 288 Gene3D Glycerol uptake facilitator protein. 25 288 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04268 Trre-Chr13 50221559 50223016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04268 1 288 Major Intrinsic Protein MIP AT2G37170 80.903 5.92e-172 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04268 K09872 - twl:119984821 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04268 13 50221559 50223016 Trre1g05019 1 56411542 56414711 ECH
Trre13g04268 13 50221559 50223016 Trre13g04268 13 50221559 50223016 ECH
Trre13g04268 13 50221559 50223016 Trre11g04273 11 55315493 55317339 ECH