Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04265 ATGGCATCCAACAGTGGTCAAGGTGGAATTCAACAACTGTTGGCTGCTGAACAAGAAGCACAACAGATTGTGAATGCTGCAAAAAATGACAAAAATGCTAGGCTGAAACATGCCAAAGAAGAGGCTGAAAAGGAGATTGCCGAACATCGAGCTCATTTGGAAAACCAGTTTCAAAAGAAAGTATCAGCGAGCAGTGGAGATTCTGGTGCTAATGTCAAGCGACTTGAGCAAGAGACTGATACAAAGATCCAACACTTGAAAACTGAGGCTGGTAGAATTTCGGGGGATGTTGTTTCCATTCTTCTCAAGTATGTAACAACCGTGAAGAACTAG 333 0.4264 MASNSGQGGIQQLLAAEQEAQQIVNAAKNDKNARLKHAKEEAEKEIAEHRAHLENQFQKKVSASSGDSGANVKRLEQETDTKIQHLKTEAGRISGDVVSILLKYVTTVKN 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04265 110 Pfam Vacuolar (H+)-ATPase G subunit 6 109 IPR005124 GO:0016471|GO:0046961|GO:1902600
Trre13g04265 110 MobiDBLite consensus disorder prediction 57 72 - -
Trre13g04265 110 Coils Coil 10 59 - -
Trre13g04265 110 Gene3D - 1 110 - -
Trre13g04265 110 MobiDBLite consensus disorder prediction 55 76 - -
Trre13g04265 110 FunFam V-type proton ATPase subunit G 3 110 - -
Trre13g04265 110 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT G 1 110 IPR005124 GO:0016471|GO:0046961|GO:1902600
Trre13g04265 110 NCBIfam V-type ATPase subunit G 2 109 IPR005124 GO:0016471|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04265 Trre-Chr13 50200545 50201365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04265 8 110 Primary Pumps ATPases(2) AT4G23710 70.874 1.07e-45 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04265 K02152 - gmx:100305477 166.777