Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04263 ATGCTAATTGCCATGTCTGTGTTATTGTCTTCATATCATAATGATGATTATGGATGTGGAGATTTTTACTTGAATTTTTCATTCAGTTGTTCTGAAAGTTTTATTCGCTTGTATCTTTTTGACAGCATCACCATATATTTCTTTGCAAAAGAAGATGAAGGCTGCATCCTCACACCGACCAAGGAAAACCATCTCGCACCTGTGACTGTACAATTCCAGCAAGGTCTCGGACAGAAGTTTAGACAGCAAGCTGGAACTGGTATTAACTTTTCAATGTTTGGGGAGTCAGATTTATTAAAGGTGGGTGACATGGATGTCTACCCTCTAGCGGTGAAGGCAGATGCATCATCTCATAATCATGATGGATCAAATGAAACTGTGACATCTGGCAAAACAAACTCTCAGATAACTCAAGCGGTGTTCGAGAAGGATAAAGGAGAACTTCGGGTAAAAGTTGTTAAGCAGATTTTGTCGATAAATGGGATGAGGTATGAGCTGCAGGAGATATACGGTATCGGAAATTCAGTGGAAAGTGGCGTGGATGACAATGAACAAGGAAAGGAATGTGTGATCTGCTTGTCGGAGCCTCGTGACACAATCGTTCATCCCTGCCGACATATGTGCATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACGAATAGATGCCCGATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATAAAGGTAGGGACTCAAGAGTAA 732 0.4194 MLIAMSVLLSSYHNDDYGCGDFYLNFSFSCSESFIRLYLFDSITIYFFAKEDEGCILTPTKENHLAPVTVQFQQGLGQKFRQQAGTGINFSMFGESDLLKVGDMDVYPLAVKADASSHNHDGSNETVTSGKTNSQITQAVFEKDKGELRVKVVKQILSINGMRYELQEIYGIGNSVESGVDDNEQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGTQE 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04263 243 CDD mRING-HC-C3HC5_MGRN1-like 187 228 IPR045195 -
Trre13g04263 243 SUPERFAMILY RING/U-box 188 233 - -
Trre13g04263 243 ProSiteProfiles Zinc finger RING-type profile. 189 228 IPR001841 -
Trre13g04263 243 PANTHER MAHOGUNIN 21 238 IPR045194 GO:0061630
Trre13g04263 243 Pfam Zinc finger, C3HC4 type (RING finger) 187 233 - -
Trre13g04263 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 238 IPR013083 -
Trre13g04263 243 SMART ring_2 189 227 IPR001841 -
Trre13g04263 243 FunFam probable E3 ubiquitin-protein ligase LOG2 173 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04263 Trre-Chr13 50185204 50186184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04263 15 208 C3H Transcription Factor Family AT3G09770 54.271 4.35e-65 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04263 - - aprc:113862864 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04263 13 50185204 50186184 Trre13g04263 13 50185204 50186184 ECH