Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04257 ATGCTTAATCTCATCGGTTTCTCGTTATTGTCTATGGATTCGGTGCCTTATAAGGGATTGTTCCATACATTCTTCGTTCTCAATTTTGTTTTTGTTCAACCCTTTGTTTCTGCTTCAGGAAATGCAGCTGAGCTGTTTGAGAGAGCATCTCAAAGTATAAAAGGAAGACATTATACTGAAGCACTTAATGATCTAAATTCTGCAATAGAAGCAGATCCAAACCTTTCAGAAGCATACCTTTCCCGTGCTTCAGTTCTTCGTCAGTTATGCAGATATGAGCAATCTGAGAGGAGTTACAAAAAGTTTCTGGAGTTAAAACCCGGACATTCAGCTGCAGAAAAGGAGCTTTCTCAGCTATTGCAAGCTCAAAGTGCGCTAGAAACAGCTCAGTCCCTCTATGATTCAGGCAACTTCACAAAATCGTTGGAATACATTGATAAAGTTGTTCTTGTTTTCTCTTCTGCGTGTACTAAGGCTAAGCTTCTTAAAGTGAGGTTGTTGATAGCTGATAAAGAGTATGAAGGTGCCATTGCCGAATCTGGTTTTCTTCTCAAGGAAGATGAAAATAATTTAGAAGCATTGTTGTTACGTGGTCGTGCATATTACTATTTAGCTGATCATGATGTTGCTACAAGGCATTACCAGAAAGGTCTTCGCCTAGATCCGGAGCATAGTGAACTGAAAAAAGCATACTTTGGATTGAAAAATCTACTAAAAAAGAGTAAAAGTGCCGAAGATAATGCTAGTAAGGGCAAGCTACGGGTGGCTGTGGAGGAATTCAAGAGTGCACTTGCTGTTGACCCTGACCATCTTGCACACAATGTAAATCTTCATCTTGGGTTATGTAAAGTGCTAGTCAGGCTTGGCAGAGGAAAAGATGCGTTGAACAGTTGTAGTGAAGCTCTTAAGATCGATGAGGAGCTTATTGATGCTCTTGTTCAGAGGGGAGAAGCTAAACTCTTGACGGAGGATTGGGAGGGTGCTGTGGAAGATCTGAAATCAGCTGCTCAAAAATCTCCACAGGATATGAATATCCGTGAAGCATTAATGAGGGCTGAAAAAGCTTTAAAGATTAGCAAGCGCAAGGATTACTACAAGATTTTGGAAATTTCAAAACATGCTTCCGCTGCTGAGATAAAACGTGCATATAAGAAACTTGCCTTACAATGGCACCCTGATAAGAATGTTGACAATAGAGAAGAAGCAGAGGCTAAATTCCGAGAAATTGCTGCCGCATACGAGATTCTAAGTGATGAAGACAAACGCACCAGATACGACAGAGGGGAGGACCTTGAAGAATCAGGAATGGGTGGCGGCGGCGGCGGAGGTTTCAATCCCTTCGGTGGAGGCGGACAACAATTTCACTTTACTTTTGACGGTGGCTTCCCTGGTGGAGGCTTTCCCGGCGGAGGCGGTGGTTATGAGTTTCATTTTTGA 1437 0.4224 MLNLIGFSLLSMDSVPYKGLFHTFFVLNFVFVQPFVSASGNAAELFERASQSIKGRHYTEALNDLNSAIEADPNLSEAYLSRASVLRQLCRYEQSERSYKKFLELKPGHSAAEKELSQLLQAQSALETAQSLYDSGNFTKSLEYIDKVVLVFSSACTKAKLLKVRLLIADKEYEGAIAESGFLLKEDENNLEALLLRGRAYYYLADHDVATRHYQKGLRLDPEHSELKKAYFGLKNLLKKSKSAEDNASKGKLRVAVEEFKSALAVDPDHLAHNVNLHLGLCKVLVRLGRGKDALNSCSEALKIDEELIDALVQRGEAKLLTEDWEGAVEDLKSAAQKSPQDMNIREALMRAEKALKISKRKDYYKILEISKHASAAEIKRAYKKLALQWHPDKNVDNREEAEAKFREIAAAYEILSDEDKRTRYDRGEDLEESGMGGGGGGGFNPFGGGGQQFHFTFDGGFPGGGFPGGGGGYEFHF 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04257 478 PRINTS DnaJ domain signature 421 440 IPR001623 -
Trre13g04257 478 PRINTS DnaJ domain signature 383 398 IPR001623 -
Trre13g04257 478 PRINTS DnaJ domain signature 365 383 IPR001623 -
Trre13g04257 478 PRINTS DnaJ domain signature 401 421 IPR001623 -
Trre13g04257 478 Pfam Tetratricopeptide repeat 192 224 IPR013105 -
Trre13g04257 478 ProSitePatterns Nt-dnaJ domain signature. 406 425 IPR018253 -
Trre13g04257 478 Coils Coil 399 419 - -
Trre13g04257 478 Gene3D Tetratricopeptide repeat domain 37 360 IPR011990 GO:0005515
Trre13g04257 478 Gene3D DnaJ domain 361 469 IPR036869 -
Trre13g04257 478 SMART tpr_5 42 75 IPR019734 GO:0005515
Trre13g04257 478 SMART tpr_5 76 109 IPR019734 GO:0005515
Trre13g04257 478 SMART tpr_5 309 342 IPR019734 GO:0005515
Trre13g04257 478 SMART tpr_5 122 155 IPR019734 GO:0005515
Trre13g04257 478 SMART tpr_5 275 308 IPR019734 GO:0005515
Trre13g04257 478 SMART tpr_5 191 224 IPR019734 GO:0005515
Trre13g04257 478 SUPERFAMILY Chaperone J-domain 357 465 IPR036869 -
Trre13g04257 478 ProSiteProfiles TPR repeat profile. 191 224 IPR019734 GO:0005515
Trre13g04257 478 SUPERFAMILY TPR-like 56 358 IPR011990 GO:0005515
Trre13g04257 478 FunFam DnaJ subfamily C member 7 361 470 - -
Trre13g04257 478 Pfam Tetratricopeptide repeat 251 318 - -
Trre13g04257 478 ProSiteProfiles TPR repeat profile. 76 109 IPR019734 GO:0005515
Trre13g04257 478 Pfam DnaJ domain 363 426 IPR001623 -
Trre13g04257 478 FunFam DnaJ domain containing protein 34 360 - -
Trre13g04257 478 ProSiteProfiles dnaJ domain profile. 363 429 IPR001623 -
Trre13g04257 478 Pfam Tetratricopeptide repeat 56 109 - -
Trre13g04257 478 SMART dnaj_3 362 421 IPR001623 -
Trre13g04257 478 CDD DnaJ 363 418 IPR001623 -
Trre13g04257 478 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 24 478 IPR044620 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04257 Trre-Chr13 50145529 50149846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04257 359 426 C2H2 Transcription Factor Family AT1G74250 44.444 5.34e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04257 K09523 - gmx:100804685 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04257 13 50145529 50149846 Trre13g04257 13 50145529 50149846 ECH