Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04255 ATGAATATACTTGGTGACCCCTTTTCAATATCCTCTTCCACTAGTGGTTTTGACAAAATCCAAAATACAAACCCTAATCCACCACAAACCAACAAGAAGAAAAGAAATCTACCAGGAACACCAGATCCAGATGCTGAAGTCATTGCTCTTTCGCCAAAGACTCTAATGGCGACGAACCGATTCGTCTGCGAAATATGCAACAAAGGGTTCCAAAGGGATCAAAATCTTCAACTTCATAGAAGAGGTCACAACTTACCATGGAAGCTAAAGCAAAGATCCAACAAAGAACCAAGAAAAAAGGTATACATCTGTCCGGAGAAAACCTGTGTCCACCACGACGCAGCCAGGGCGCTCGGAGACCTTACCGGAATAAAGAAACATTTTAGTAGAAAACATGGTGAAAAGAAATGGAAGTGTGATAAGTGTTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACACCAAAACTTGTGGTACTAGAGAATATAAGTGTGACTGTGGTACCCTCTTCTCTAGGAAGGATAGCTTTATAACACATAGAGCTTTCTGTGATGCATTAGCAGAAGAAAGTGCAAGACACACCTCACTCACTCCTCCAACAACACTAAATTTCAAGAATGAAGAATCAAATATGATGAACACACAAACTAGTTTATCACATAATGGATTAATATCATGTCAAGGACTTCAAAATCTTCCACAATATGGTTCATCACATGCAATATTTCATCATGAACAACAAAGACCAAACTTATCATTGTGGCTAAACCAAGAAAATCAACAAATTAATCATCATCATCAAATTCAACATGATTCACTTGATGATCATGTTTCATCAAGTTTTTGTGATGTTATGCAAATGACACAAACTAGTAATGCTCCAATGTCAGCTACTGCACTTCTTCAAAAAGCAGCTCAAATGGGTTCAACAAGAAGTAACACTAATAATCCTTCCATTTTTAGTGGAAGTTTTGGTTTAATGAGTTCATCTTCAACACAAACTAATAATAGTACTCTAAACCAAAACCATGATGAGGTTAATATGGTCATTAACCAAAAGATGAAGCAGCATGAGAATTATAATATTCTTCCAAGTAGTAGTAATACTAATAATGCAACTATGGTTGGTAATGTTAATGGTAATTCAAGTAATGGATTTAGAGATTTTCTTGGTGTGAGTAATGATCATCATCATCCATTTTTACCACAAGAGCTTGCAAAGTTTGCTTCAATGACTTCATCTATGATGAGATTCAATGAATTCAATGCATGA 1278 0.3615 MNILGDPFSISSSTSGFDKIQNTNPNPPQTNKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEPRKKVYICPEKTCVHHDAARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARHTSLTPPTTLNFKNEESNMMNTQTSLSHNGLISCQGLQNLPQYGSSHAIFHHEQQRPNLSLWLNQENQQINHHHQIQHDSLDDHVSSSFCDVMQMTQTSNAPMSATALLQKAAQMGSTRSNTNNPSIFSGSFGLMSSSSTQTNNSTLNQNHDEVNMVINQKMKQHENYNILPSSSNTNNATMVGNVNGNSSNGFRDFLGVSNDHHHPFLPQELAKFASMTSSMMRFNEFNA 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04255 425 MobiDBLite consensus disorder prediction 11 36 - -
Trre13g04255 425 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 413 IPR031140 -
Trre13g04255 425 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Trre13g04255 425 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Trre13g04255 425 FunFam protein indeterminate-domain 12-like 40 108 - -
Trre13g04255 425 Gene3D Classic Zinc Finger 96 185 - -
Trre13g04255 425 SMART c2h2final6 61 83 IPR013087 -
Trre13g04255 425 SMART c2h2final6 137 157 IPR013087 -
Trre13g04255 425 SMART c2h2final6 102 132 IPR013087 -
Trre13g04255 425 MobiDBLite consensus disorder prediction 11 44 - -
Trre13g04255 425 Gene3D Classic Zinc Finger 57 84 - -
Trre13g04255 425 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Trre13g04255 425 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Trre13g04255 425 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04255 Trre-Chr13 50125096 50127149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04255 3 413 IDZ Gene Family AT5G03150 50.395 5.41e-136 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre13g04255 zf-C2H2 0.0041 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04255 K25870 - tpra:123892932 738.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04255 13 50125096 50127149 Trre13g04255 13 50125096 50127149 ECH