Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04254 ATGGACAAAAATCCTCATTCCGAAATCCAACTCCCTCCTGGATTTAGATTTCATCCTTCTGATGAAGAACTCATTGTTCACTATCTAAGAAACAAAGTGACTTCATCTCCTCTTCCTGCTTCATTCATAGCAGACATAGATCTTTACAAGTACAATCCATGGGAGCTTCCAAGTAAAGCTTTGTTTGGAGAGGAAGAATGGTATTTCTTTACTCCAAGGGATAGAAAGTATCCCAAAGGATTGAGGCCTAATAGAGCAGCTGGTGCAGGTTATTGGAAAGCTACTGGAACTGATAAACCTATTCTTACTTCATGTGGGTTGAAAAGCATTGGAGTGAAGAAAGCCCTTGTATTCTATAAGGGTCGTCCACCAAAAGGATCTAAAACTGACTGGATCATGAATGAGTATAGGTTGCATGATTCAATGATCTCAAATTCCAAGCATAGTGGTTCTATGAGACTGGATGAGTGGGTGCTATGCCGAGTTCGACAAAAAATCGGAAGTCCAAGAAGCAATTGGGAAGATTCAAATGAACTAAGTTATGAACCAACAAGTCAGTTCCAACAAATGAATGAGATCTCTAATCCTGAACCAATGAAAAACTATGTGCAGAATGAATACCCAATGTTACCTTATATTTTGGCTTCTAAGACTGTTCTGCCTAATTCCATTGGTATGGCCTCAGACAATGTAAAGCCCCGTGCTTCATTTTATGAAGACAACTTAAACATAATAGGAGCACAGTTCTTATCATCTGCAACTGAGGGATTGTTCAATCCGCTGAAGAGAAAAGCTGTCGAAGATGATATGGAGATGGACTTTTATGCTGTCCTCAATAAAAATCTAAGCAGAGAAGTTGATGATGGGAAGGAAAAACTTGAGAAAGATTTAAGCAAAGAGAACAATTTCTACAACTTTGATCAGTGGACTTCAATCATACAACCTCAAGAGCTTAATAGCTTAGTCTTCACTGGATATACATAA 984 0.3852 MDKNPHSEIQLPPGFRFHPSDEELIVHYLRNKVTSSPLPASFIADIDLYKYNPWELPSKALFGEEEWYFFTPRDRKYPKGLRPNRAAGAGYWKATGTDKPILTSCGLKSIGVKKALVFYKGRPPKGSKTDWIMNEYRLHDSMISNSKHSGSMRLDEWVLCRVRQKIGSPRSNWEDSNELSYEPTSQFQQMNEISNPEPMKNYVQNEYPMLPYILASKTVLPNSIGMASDNVKPRASFYEDNLNIIGAQFLSSATEGLFNPLKRKAVEDDMEMDFYAVLNKNLSREVDDGKEKLEKDLSKENNFYNFDQWTSIIQPQELNSLVFTGYT 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04254 327 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Trre13g04254 327 ProSiteProfiles NAC domain profile. 11 165 IPR003441 GO:0003677|GO:0006355
Trre13g04254 327 SUPERFAMILY NAC domain 8 165 IPR036093 GO:0003677|GO:0006355
Trre13g04254 327 Gene3D NAC domain 20 167 IPR036093 GO:0003677|GO:0006355
Trre13g04254 327 FunFam NAC domain-containing protein 72-like 20 170 - -
Trre13g04254 327 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04254 Trre-Chr13 50108657 50109968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04254 7 170 NAC Transcription Factor Family AT1G69490 67.073 2.04e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre13g04254 NAM 1.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04254 - - cam:101491216 575.474