Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04253 ATGAGCGTCATCGACATTTTAACCCGAGTCAACTCAATTTGCAACAAGTACCATCGATACGACGTCGTTAAGCAAAACGATTCAAATATCTCCGCCGACGACGCATTTGCCAAACTCTACTCCGTCGTCGACGCCGACATCGAGGTTGCACTTCAGAAAGCAGAAACTGCTTCTAAGGAGAAAAATAGGGCTTCAATTGTAGCGATCAATGCCGAGATTCGTCGTACTAAGGCTAGGTTACTGGAAGAGATCCCCAAGTTGCAGAGATTGGCAGTGAAAAAGGTAAAGGGGCTTTCGTCGCAAGAATTTGCTGCCCGTAATGATTTGGTTCTTTCATTGCCAGAGAGGATCCAAGCTATCCCGGATGGGACTCCTGCTGCACCCAAACAAACTGGAGGTTGGGGAGCTTCTGCCTCACGTCCTGAAATTAAATTTGATTCAGATGGACGGTTCGATGATGAATACTTTGAACAAACCGAAGAATCAAGTCAGTTTAGGCAGGAGTATGAAATGCGTAAAATGAAACAGGATCAAGGTTTGGATGTGATTGCAGAAGGATTATATACTTTGAAAAACATGGCTCACGATATGAATGAGGAATTTGATAAGCAAGTTCCACTGATGGATGAGATTGATACAAAGGTGGGCAAGGCATCCTCTGACCTTAAAAATACCAATGTTAGACTTAAAGACACAGTTACCCAGCTACGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCCTATTTGTACAAGTAA 786 0.4262 MSVIDILTRVNSICNKYHRYDVVKQNDSNISADDAFAKLYSVVDADIEVALQKAETASKEKNRASIVAINAEIRRTKARLLEEIPKLQRLAVKKVKGLSSQEFAARNDLVLSLPERIQAIPDGTPAAPKQTGGWGASASRPEIKFDSDGRFDDEYFEQTEESSQFRQEYEMRKMKQDQGLDVIAEGLYTLKNMAHDMNEEFDKQVPLMDEIDTKVGKASSDLKNTNVRLKDTVTQLRSSRNFCIDIVLLIIILGIAAYLYK 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04253 261 MobiDBLite consensus disorder prediction 122 142 - -
Trre13g04253 261 FunFam Putative syntaxin-71-like 170 231 - -
Trre13g04253 261 SMART tSNARE_6 165 232 IPR000727 -
Trre13g04253 261 Pfam SNARE domain 207 256 IPR000727 -
Trre13g04253 261 Gene3D - 177 241 - -
Trre13g04253 261 SUPERFAMILY SNARE fusion complex 163 230 - -
Trre13g04253 261 Coils Coil 70 90 - -
Trre13g04253 261 CDD SNARE_Qc 175 230 - -
Trre13g04253 261 PANTHER SYNTAXIN 50 252 IPR045242 -
Trre13g04253 261 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04253 Trre-Chr13 50104762 50106756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04253 1 260 SNARE and Associated Proteins AT3G09740 74.427 1.08e-146 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04253 K08506 - gmx:100804155 419.083