Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04251 ATGGGGCATAGACACCTATATAATGCATCATCTCCAATGTTTGAGGGTGAGGCTGACCAGAATTGGAATCATATGCTTACTGATCAACATCATGTGAACCATGGGGGGACCAGCTCTTCAGAGAATGGTTCTTTTAATTATCCTGTGGAAAATGTATCCATAGATAACATTTATTTCCCCTCTCATTGGAATGCCAACACAGCGTCAAATGGATATGTATCCTCTGGCCTCAACATTGAAGTACCTCCTCGTCCTCATCAATTGGATACACCAGGCACTTCTAACAATCATTTTATGCATTCATCTAGTGCTGGACCTTTCTTTACAGTGTCTGAAAATTATGTACACCAGCCTTCTTCTTCTTCCACTTATGACAGACAAGCATTTCATGTTGATAGTGGTTTTATTGATCTTACAATGGGAAGTGGACGAGGACATCACAAGAGAAAGAGCCCTGGAATTCCTTCAGTCTATGAGAGAGGCAGTTCAAGTGGATATTTCAATGCTGGGAGTTCAACTGATCTTCCTATGCCTTCAGAATCACGGCCAGAGAAGCCAAATATGGATTCTCAGTATATGCCTTGGGATCATGTTGCTATGGCACCTTCTTTTAGAGGTGCTGGCCTCTCAATGAAGGGTGAGAGTTCTGTAAGGAATGTGAGGAGCCGTTCTGCACTTGATTTGGAATCCAACCTGTCTAGGACCCATTTGTCAAGTAACCATTCACACAACTCGTACCCTAATGTCCCACCAGTCGGCCATTCTAGCTTGGCAGATCTTTCAGCTCAGGTTTCTACCTCTTTGACAAGGGATTGGAGCCAAATGAACGCAACTCCTGCTAATGGAAGAGTGTTATTATCAGATACTAGTACTTTTGGTCTTGAGACAAGTCACTTCCCTGTTGGAAATGCTGCTACTACTGCTGCTAGTAATGCTACTTTAGATGTCGGAAGCTTCCATCATGAATATGGTACAAGCAGAAATCCTACTACTGCTCAAAGTTTTCAAAATTTGACTCAGACTGCGAGGGGAACACGAAGTAATTACTCTCAAAGATCTGCTCCAGCTTATAGGGCTTCTTCAAGCTTGCGTCTGGGACATGCGCCTTCGGATAATAATGGATTGCCCATGGTAGCTGAAAGTCACCCTTCTAGACATCCTAGGCCGTTGACCACTATTGGCTGGCGGAACAGTGATAGAAATGGAAGGTCAAGAATTTCTAATGAAAGATATAGAGCATTGGCTGATGAGGCTAGTCTCCATGCTAGATTTGCTTCTGAGGTACCGGGTTTCATGATTGTTGAACGTGCTTCACTATATGGTTCTAGGAATATGCTTGATCAGCACAGAGACATGAGGTTGGACGTAGATAGCATGAGCTATGAGGAACTACTTGCACTTGGGGAGAGGATTGGCCAGGTGAACACAGGATTGTCTGAGGATACGGTTTCCAAGTGTTTGACGGAAACAATATATTGTTCATCTGACCAATGTCAGGATGAAGGAAGCTGTGTGATCTGTCTGGAAGAGTACAAGAACATGGATGATGTTGGGACACTTAAAACTTGTGGACATGACTACCATGTGAGCTGCATTAAAAAGTGGTTATCTATGAAGAAATTATGTCCTATCTGCAAAGCTTCTGCTTTGCCTGAGGATAAGAAGGATAAATAA 1674 0.4307 MGHRHLYNASSPMFEGEADQNWNHMLTDQHHVNHGGTSSSENGSFNYPVENVSIDNIYFPSHWNANTASNGYVSSGLNIEVPPRPHQLDTPGTSNNHFMHSSSAGPFFTVSENYVHQPSSSSTYDRQAFHVDSGFIDLTMGSGRGHHKRKSPGIPSVYERGSSSGYFNAGSSTDLPMPSESRPEKPNMDSQYMPWDHVAMAPSFRGAGLSMKGESSVRNVRSRSALDLESNLSRTHLSSNHSHNSYPNVPPVGHSSLADLSAQVSTSLTRDWSQMNATPANGRVLLSDTSTFGLETSHFPVGNAATTAASNATLDVGSFHHEYGTSRNPTTAQSFQNLTQTARGTRSNYSQRSAPAYRASSSLRLGHAPSDNNGLPMVAESHPSRHPRPLTTIGWRNSDRNGRSRISNERYRALADEASLHARFASEVPGFMIVERASLYGSRNMLDQHRDMRLDVDSMSYEELLALGERIGQVNTGLSEDTVSKCLTETIYCSSDQCQDEGSCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKASALPEDKKDK 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04251 557 SMART ring_2 504 545 IPR001841 -
Trre13g04251 557 Pfam Ring finger domain 503 546 IPR001841 -
Trre13g04251 557 SUPERFAMILY RING/U-box 495 550 - -
Trre13g04251 557 CDD RING-H2_RNF24-like 504 549 - -
Trre13g04251 557 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 96 550 IPR045191 GO:0061630
Trre13g04251 557 MobiDBLite consensus disorder prediction 341 358 - -
Trre13g04251 557 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 469 550 - -
Trre13g04251 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 469 550 IPR013083 -
Trre13g04251 557 ProSiteProfiles Zinc finger RING-type profile. 504 546 IPR001841 -
Trre13g04251 557 MobiDBLite consensus disorder prediction 341 402 - -
Trre13g04251 557 MobiDBLite consensus disorder prediction 142 187 - -
Trre13g04251 557 MobiDBLite consensus disorder prediction 157 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04251 Trre-Chr13 50089913 50092400 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04251 1 556 C3H Transcription Factor Family AT2G37150 41.084 2.12e-107 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04251 - - tpra:123892936 1103.58