Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04250 ATGGGGCATAGACACCTATATAATGCATCATCTCCAATGTTTGAGGGTGAGGCTGACCAGAATTGGAATCATATGCTTACTGATCAACATCATGTGAACCATGGGGGGACCAGCTCTTCAGAGAATGGTTCTTTTAATTATCCTGTGGAAAATGTATCCATAGATAACATTTATTTCCCCTCTCATTGGAATGCCAACACAGCGTCAAATGGATATGTATCCTCTGGCCTCAACATTGAAGTACCTCCTCGTCCTCATCAATTGGATACACCAGGCACTTCTAACAATCATTTTATGCATTCATCTAGTGCTGGACCTTTCTTTACAGTGTCTGAAAATTATGTACACCAGCCTTCTTCTTCTTCCACTTATGACAGACAAGCATTTCATGTTGATAGTGGTTTTATTGATCTTACAATGGGAAGTGGACGAGGACATCACAAGAGAAAGAGCCCTGGAATTCCTTCAGTCTATGAGAGAGGCAGTTCAAGTGGATATTTCAATGCTGGGAGTTCAACTGATCTTCCTATGCCTTCAGAATCACGGCCAGAGAAGCCAAATATGGATTCTCAGTATATGCCTTGGGATCATGTTGCTATGGCACCTTCTTTTAGAGGTGCTGGCCTCTCAATGAAGGGTGAGAGTTCTGTAAGGAATGTGAGGAGCCGTTCTGCACTTGATTTGGAATCCAACCTGTCTAGGACCCATTTGTCAAGTAACCATTCACACAACTCGTACCCTAATGTCCCACCAGTCGGCCATTCTAGCTTGGCAGATCTTTCAGCTCAGGTTTCTACCTCTTTGACAAGGGATTGGAGCCAAATGAACGCAACTCCTGCTAATGGAAGAGTGTTATTATCAGATACTAGTACTTTTGGTCTTGAGACAAGTCACTTCCCTGTTGGAAATGCTGCTACTACTGCTGCTAGTAATGCTACTTTAGATGTCGGAAGCTTCCATCATGAATATGGTACAAGCAGAAATCCTACTACTGCTCAAAGTTTTCAAAATTTGACTCAGACTGCGAGGGGAACACGAAGTAATTACTCTCAAAGATCTGCTCCAGCTTATAGGGCTTCTTCAAGCTTGCGTCTGGGACATGCGCCTTCGGATAATAATGGATTGCCCATGGTAGCTGAAAGTCACCCTTCTAGACATCCTAGGCCGTTGACCACTATTGGCTGGCGGAACAGTGATAGAAATGGAAGGTCAAGAATTTCTAATGAAAGATATAGAGCATTGGCTGATGAGGCTAGTCTCCATGCTAGATTTGCTTCTGAGGGTTTCATGATTGTTGAACGTGCTTCACTATATGGTTCTAGGAATATGCTTGATCAGCACAGAGACATGAGGTTGGACGTAGATAGCATGAGCTATGAGGAACTACTTGCACTTGGGGAGAGGATTGGCCAGGTGAACACAGGATTGTCTGAGGATACGGTTTCCAAGTGTTTGACGGAAACAATATATTGTTCATCTGACCAATGTCAGGATGAAGGAAGCTGTGTGATCTGTCTGGAAGAGTACAAGAACATGGATGATGTTGGGACACTTAAAACTTGTGGACATGACTACCATGTGAGCTGCATTAAAAAGTGGTTATCTATGAAGAAATTATGTCCTATCTGCAAAGCTTCTGCTTTGCCTGAGGATAAGAAGGATAAATAA 1668 0.4299 MGHRHLYNASSPMFEGEADQNWNHMLTDQHHVNHGGTSSSENGSFNYPVENVSIDNIYFPSHWNANTASNGYVSSGLNIEVPPRPHQLDTPGTSNNHFMHSSSAGPFFTVSENYVHQPSSSSTYDRQAFHVDSGFIDLTMGSGRGHHKRKSPGIPSVYERGSSSGYFNAGSSTDLPMPSESRPEKPNMDSQYMPWDHVAMAPSFRGAGLSMKGESSVRNVRSRSALDLESNLSRTHLSSNHSHNSYPNVPPVGHSSLADLSAQVSTSLTRDWSQMNATPANGRVLLSDTSTFGLETSHFPVGNAATTAASNATLDVGSFHHEYGTSRNPTTAQSFQNLTQTARGTRSNYSQRSAPAYRASSSLRLGHAPSDNNGLPMVAESHPSRHPRPLTTIGWRNSDRNGRSRISNERYRALADEASLHARFASEGFMIVERASLYGSRNMLDQHRDMRLDVDSMSYEELLALGERIGQVNTGLSEDTVSKCLTETIYCSSDQCQDEGSCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKASALPEDKKDK 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04250 555 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 467 548 IPR013083 -
Trre13g04250 555 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 96 548 IPR045191 GO:0061630
Trre13g04250 555 ProSiteProfiles Zinc finger RING-type profile. 502 544 IPR001841 -
Trre13g04250 555 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 467 548 - -
Trre13g04250 555 SUPERFAMILY RING/U-box 493 548 - -
Trre13g04250 555 Pfam Ring finger domain 501 544 IPR001841 -
Trre13g04250 555 CDD RING-H2_RNF24-like 502 547 - -
Trre13g04250 555 MobiDBLite consensus disorder prediction 341 358 - -
Trre13g04250 555 SMART ring_2 502 543 IPR001841 -
Trre13g04250 555 MobiDBLite consensus disorder prediction 157 178 - -
Trre13g04250 555 MobiDBLite consensus disorder prediction 341 402 - -
Trre13g04250 555 MobiDBLite consensus disorder prediction 142 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04250 Trre-Chr13 50089913 50092400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04250 1 554 C3H Transcription Factor Family AT2G37150 41.228 2.05e-109 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04250 - - tpra:123892936 1094.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04250 13 50089913 50092400 Trre13g04250 13 50089913 50092400 ECH