Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04246 ATGGCCGATAAAGTCCCTCCTAACGCGAATGCTGGATCTCAAGGGTTCAACCCAGGCTTAATAGTTCTTCTGGTTGTTGGAGGGTTGCTATTGACATTCCTCATCGGAAATTATGTGCTCTACGCTTATGCACAGAAGACCATCCCTCCAAGAAAAAAGAAGCCGGTTTCCAAAAAGAAGATGAAAAAGGAGAGATTGAAGCAAGGAGTCTCTGCACCTGGAGAGTAG 228 0.4561 MADKVPPNANAGSQGFNPGLIVLLVVGGLLLTFLIGNYVLYAYAQKTIPPRKKKPVSKKKMKKERLKQGVSAPGE 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04246 75 PANTHER DNA-BINDING PROTEIN S1FA2 9 75 IPR006779 GO:0003677|GO:0005634|GO:0006355
Trre13g04246 75 MobiDBLite consensus disorder prediction 51 65 - -
Trre13g04246 75 Pfam DNA binding protein S1FA 12 75 IPR006779 GO:0003677|GO:0005634|GO:0006355
Trre13g04246 75 MobiDBLite consensus disorder prediction 50 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04246 Trre-Chr13 50075919 50077299 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF S1Fa-like Trre13g04246 S1FA 5.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04246 - - tpra:123892939 129.413