Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04236 ATGAGCGCACGTATTGTGACAACTGCAAAACATCAATATTTGACTACCACAGAAGCTGTACAGAATGCTCCTTTGACCTTTGTCTTCTCTGTTGCTGCGAGCTTCGTCACAACAACTATAGAGAAAGAATCTGATGATGAGATTCGTGAATGGTCAAAGTCTAGGTGGCATGCAGATAGTGATGGTAACATTCCCTGTCCAAAAGCCAATAACGAATGTGATCATGGTTACCTTGAACTGAGAAGCATATTTCAGCCAAATTGCATCTCTGAGTTAGTATGTAAAGCAAAAGAACTTGCAATAACAATCAAACTTCAAGAAACAGAGGAGCCTCTTGATAATAGGTGTTCTTGTTTGAAGTCTGTTAGAAACGCAGATGATATACACAATAACACAAGGGAAGCAGCATTTCGTGAAGATACCAGTGGCAACACTTTATACAGTCCTAGGGCTATAGATCTACATCATGAAGGTTTAAGACATTTTCAATGGCACTGGAGCAAAGGGGAGCCTATCATTGTCAGAAATGTACTTGAATGTACTTCTGGCTTAAGCTGGGAGCCGCTTGTCATGTGGCGTGCATTTCGTCAGAGAAGGAAGTCCAAGGACAATTCATTTTATAATGTGAAGGCAATTGATTGCTTAGATTGGTGTGAGGTAGATATTAATGTGCACCAATTCTTTATTGGGTACACAAATGGCCGCGAAGATTGGAAAAATTGGCCTCAGGTGTTGAAATTGAAAGATTGGCCTCCTTCTAATTTATTTGAGGAAAGGTTGCCTCGTCATTGTGCCGAGTTCATATCTTCCTTGCCGTATAAAGAATATACAGATCCTTTCAACGGTGCTCTTAACCTTGCTGTGAAGCTGCCTGATAATGTTCAAAAGCCAGACATGGGACCGAAAACATATATTGCATATGGATTTGCTCTGGAGCTTGGACGGGGTGATTCTGTGACTAAGCTCCATTGTGATATGTCTGATGCAGTAAATTTGTTGACTCATATTGCTAAAGTGGAACTGGAACCTGCGACCATTGCTGCAATTAAGAAATTGACACAAAAACACCTTGAGCAAGACAAGAGGGAGCTACATGGTCATAATCAGGATGGAGAAACAAATGTTGACATGGTTGATAATTTGTCCTCTTCCATAAATGCTTCAAATGAAGGGGATTCTTTAGACGGTGCTCTTTGGGATATCTTCCGGAGAGAAGATGTACCTGTATTGGAGGAATATCTGAATAAGCATTTCAGAGAGTTCAGACATATTCATTGCTCTTCTTTAGATGAGGTTATCCACCCAATACATGATCAGACCTTTTATCTAACCATCAAGCATAAGAAGAGGCTTAAGGAGGAGTATGGAATTGAGCCTTGGACTTTTGTTCAGAAACTAGGAGAAGGTGTTTTCATTCCAGCTGGTTGCCCCCACCAAGTCAGAAATCTGAAGTCATGTACCAAGGTTGCACTTGATTTTGTCTCTCCAGAAAATGTTGGTCAGTGCTTTCATTTGACTGAGGAGTTTCGCAAACTTCCAGTAAATCACAGGTCCTCAGAGGATAAATTGGAGGTGAAGAAAATGATTATACATGCCATGGTTGATGTAGTCAATACCTTGGAGGAAACAAGGTCTAAGGAAATGGAAGTTCCATTGTAA 1659 0.4063 MSARIVTTAKHQYLTTTEAVQNAPLTFVFSVAASFVTTTIEKESDDEIREWSKSRWHADSDGNIPCPKANNECDHGYLELRSIFQPNCISELVCKAKELAITIKLQETEEPLDNRCSCLKSVRNADDIHNNTREAAFREDTSGNTLYSPRAIDLHHEGLRHFQWHWSKGEPIIVRNVLECTSGLSWEPLVMWRAFRQRRKSKDNSFYNVKAIDCLDWCEVDINVHQFFIGYTNGREDWKNWPQVLKLKDWPPSNLFEERLPRHCAEFISSLPYKEYTDPFNGALNLAVKLPDNVQKPDMGPKTYIAYGFALELGRGDSVTKLHCDMSDAVNLLTHIAKVELEPATIAAIKKLTQKHLEQDKRELHGHNQDGETNVDMVDNLSSSINASNEGDSLDGALWDIFRREDVPVLEEYLNKHFREFRHIHCSSLDEVIHPIHDQTFYLTIKHKKRLKEEYGIEPWTFVQKLGEGVFIPAGCPHQVRNLKSCTKVALDFVSPENVGQCFHLTEEFRKLPVNHRSSEDKLEVKKMIIHAMVDVVNTLEETRSKEMEVPL 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04236 552 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 45 547 IPR045109 GO:0032454|GO:0033169
Trre13g04236 552 Pfam JmjC domain, hydroxylase 393 493 IPR003347 -
Trre13g04236 552 SMART cupin_9 260 510 IPR003347 -
Trre13g04236 552 FunFam Transcription factor jumonji domain-containing protein 143 519 - -
Trre13g04236 552 ProSiteProfiles JmjC domain profile. 279 510 IPR003347 -
Trre13g04236 552 Gene3D Cupin 150 519 - -
Trre13g04236 552 SUPERFAMILY Clavaminate synthase-like 156 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04236 Trre-Chr13 50011143 50017996 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre13g04236 JmjC 5.4e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04236 K15601 - gmx:100780803 727.243