Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04235 ATGAGCGCACGTATTGTGACAACTGCAAAACATCAATATTTGACTACCACAGAAGCTCTTCGTCGTGGGCAACTTCTAGGTGGTGCAGATCCATTTGATTTCAAGTTTATCTTCCGAGGGAAAGATTATCTGCATGGTGGAAAAGCAAAGACAACAACTATAGAGAAAGAATCTGATGATGAGATTCGTGAATGGTCAAAGTCTAGGTGGCATGCAGATAGTGATGGTAACATTCCCTGTCCAAAAGCCAATAACGAATGTGATCATGGTTACCTTGAACTGAGAAGCATATTTCAGCCAAATTGCATCTCTGAGTTAGTATGTAAAGCAAAAGAACTTGCAATAACAATCAAACTTCAAGAAACAGAGGAGCCTCTTGATAATAGGTGTTCTTGTTTGAAGTCTGTTAGAAACGCAGATGATATACACAATAACACAAGGGAAGCAGCATTTCGTGAAGATACCAGTGGCAACACTTTATACAGTCCTAGGGCTATAGATCTACATCATGAAGGTTTAAGACATTTTCAATGGCACTGGAGCAAAGGGGAGCCTATCATTGTCAGAAATGTACTTGAATGTACTTCTGGCTTAAGCTGGGAGCCGCTTGTCATGTGGCGTGCATTTCGTCAGAGAAGGAAGTCCAAGGACAATTCATTTTATAATGTGAAGGCAATTGATTGCTTAGATTGGTGTGAGGTAGATATTAATGTGCACCAATTCTTTATTGGGTACACAAATGGCCGCGAAGATTGGAAAAATTGGCCTCAGGTGTTGAAATTGAAAGATTGGCCTCCTTCTAATTTATTTGAGGAAAGGTTGCCTCGTCATTGTGCCGAGTTCATATCTTCCTTGCCGTATAAAGAATATACAGATCCTTTCAACGGTGCTCTTAACCTTGCTGTGAAGCTGCCTGATAATGTTCAAAAGCCAGACATGGGACCGAAAACATATATTGCATATGGATTTGCTCTGGAGCTTGGACGGGGTGATTCTGTGACTAAGCTCCATTGTGATATGTCTGATGCAGTAAATTTGTTGACTCATATTGCTAAAGTGGAACTGGAACCTGCGACCATTGCTGCAATTAAGAAATTGACACAAAAACACCTTGAGCAAGACAAGAGGGAGCTACATGGTCATAATCAGGATGGAGAAACAAATGTTGACATGGTTGATAATTTGTCCTCTTCCATAAATGCTTCAAATGAAGGGGATTCTTTAGACGGTGCTCTTTGGGATATCTTCCGGAGAGAAGATGTACCTGTATTGGAGGAATATCTGAATAAGCATTTCAGAGAGTTCAGACATATTCATTGCTCTTCTTTAGATGAGGTTATCCACCCAATACATGATCAGACCTTTTATCTAACCATCAAGCATAAGAAGAGGCTTAAGGAGGAGTATGGAATTGAGCCTTGGACTTTTGTTCAGAAACTAGGAGAAGGTGTTTTCATTCCAGCTGGTTGCCCCCACCAAGTCAGAAATCTGAAGTCATGTACCAAGGTTGCACTTGATTTTGTCTCTCCAGAAAATGTTGGTCAGTGCTTTCATTTGACTGAGGAGTTTCGCAAACTTCCAGTAAATCACAGGTCCTCAGAGGATAAATTGGAGGTGAAGAAAATGATTATACATGCCATGGTTGATGTAGTCAATACCTTGGAGGAAACAAGGTCTAAGGAAATGGAAGTTCCATTGTAA 1701 0.4056 MSARIVTTAKHQYLTTTEALRRGQLLGGADPFDFKFIFRGKDYLHGGKAKTTTIEKESDDEIREWSKSRWHADSDGNIPCPKANNECDHGYLELRSIFQPNCISELVCKAKELAITIKLQETEEPLDNRCSCLKSVRNADDIHNNTREAAFREDTSGNTLYSPRAIDLHHEGLRHFQWHWSKGEPIIVRNVLECTSGLSWEPLVMWRAFRQRRKSKDNSFYNVKAIDCLDWCEVDINVHQFFIGYTNGREDWKNWPQVLKLKDWPPSNLFEERLPRHCAEFISSLPYKEYTDPFNGALNLAVKLPDNVQKPDMGPKTYIAYGFALELGRGDSVTKLHCDMSDAVNLLTHIAKVELEPATIAAIKKLTQKHLEQDKRELHGHNQDGETNVDMVDNLSSSINASNEGDSLDGALWDIFRREDVPVLEEYLNKHFREFRHIHCSSLDEVIHPIHDQTFYLTIKHKKRLKEEYGIEPWTFVQKLGEGVFIPAGCPHQVRNLKSCTKVALDFVSPENVGQCFHLTEEFRKLPVNHRSSEDKLEVKKMIIHAMVDVVNTLEETRSKEMEVPL 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04235 566 Gene3D Cupin 164 533 - -
Trre13g04235 566 Pfam JmjC domain, hydroxylase 407 507 IPR003347 -
Trre13g04235 566 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 16 561 IPR045109 GO:0032454|GO:0033169
Trre13g04235 566 SUPERFAMILY Clavaminate synthase-like 170 549 - -
Trre13g04235 566 ProSiteProfiles JmjC domain profile. 293 524 IPR003347 -
Trre13g04235 566 FunFam Transcription factor jumonji domain-containing protein 157 533 - -
Trre13g04235 566 SMART cupin_9 274 524 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04235 Trre-Chr13 50011143 50017996 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre13g04235 JmjC 5.4e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04235 K15601 - gmx:100780803 761.525