Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04229 ATGCCTGATGACTTTGAATTTTCCGATAAAGTTCCTCCTTCCTTCGATCGCATGAATGCTGGATCTCAAGGGTTCAACCCGGGCTTAATTGTTCTCCTGGTTGTTGGTGGGTTGCTATTGACATTCCTCGTCAGAAATTATGCGCTCTACGTTTATGCACATAAAACCATCCCTCCAAGAAAAAAGAAGCCAATCTCAAAAAAGAAGATGAAAAAGGAGAGACTGAAGCAAGGGGTCTCAGCACCAGGAGAGTAG 255 0.4392 MPDDFEFSDKVPPSFDRMNAGSQGFNPGLIVLLVVGGLLLTFLVRNYALYVYAHKTIPPRKKKPISKKKMKKERLKQGVSAPGE 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04229 84 Pfam DNA binding protein S1FA 21 84 IPR006779 GO:0003677|GO:0005634|GO:0006355
Trre13g04229 84 MobiDBLite consensus disorder prediction 60 84 - -
Trre13g04229 84 PANTHER DNA-BINDING PROTEIN S1FA2 1 84 IPR006779 GO:0003677|GO:0005634|GO:0006355
Trre13g04229 84 MobiDBLite consensus disorder prediction 60 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04229 Trre-Chr13 49951829 49953913 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF S1Fa-like Trre13g04229 S1FA 2.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04229 - - gmx:100500059 126.331