Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04228 ATGATAGTTGCATCGTTAGATAAGGTAAATTTGTTGACTCATATTGCTAAAGTGGAACTGGAACCTGCGACCATTGCTGCAATTAAGAAATTGACACAAAAACACCTTGAGCAAGACAAGAGGGAGCTACATGGTCATAATCAGGATGGAGAAACAAATGTTGACATGGTTGATAATTTGTCCTCTTCCATAAATGCTTCAAATGAAGGGGATTCTTTAGACGGTGCTCTTTGGGATATCTTCCGGAGAGAAGATGTACCTGTATTGGAGGAATATCTGAATAAGCATTTCAGAGAGTTCAGACATATTCATTGCTCTTCTTTAGATGAGGTTATCCACCCAATACATGATCAGACCTTTTATCTAACCATCAAGCATAAGAAGAGGCTTAAGGAGGAGTATGGAATTGAGCCTTGGACTTTTGTTCAGAAACTAGGAGAAGGTGTTTTCATTCCAGCTGGTTGCCCCCACCAAGTCAGAAATCTGAAGTCATGTACCAAGGTTGCACTTGATTTTGTCTCTCCAGAAAATGTTGGTCAGTGCTTTCATTTGACTGAGGAGTTTCGCAAACTTCCAGTAAATCACAGGTCCTCAGAGGATAAATTGGAGGTATGCCAGACTACTTATCTTATCTGGATTTGA 642 0.4003 MIVASLDKVNLLTHIAKVELEPATIAAIKKLTQKHLEQDKRELHGHNQDGETNVDMVDNLSSSINASNEGDSLDGALWDIFRREDVPVLEEYLNKHFREFRHIHCSSLDEVIHPIHDQTFYLTIKHKKRLKEEYGIEPWTFVQKLGEGVFIPAGCPHQVRNLKSCTKVALDFVSPENVGQCFHLTEEFRKLPVNHRSSEDKLEVCQTTYLIWI 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04228 213 SMART cupin_9 4 189 IPR003347 -
Trre13g04228 213 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 7 209 IPR045109 GO:0032454|GO:0033169
Trre13g04228 213 Gene3D Cupin 2 198 - -
Trre13g04228 213 ProSiteProfiles JmjC domain profile. 1 189 IPR003347 -
Trre13g04228 213 Pfam JmjC domain, hydroxylase 71 172 IPR003347 -
Trre13g04228 213 SUPERFAMILY Clavaminate synthase-like 77 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04228 Trre-Chr13 49944866 49948208 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre13g04228 JmjC 7.3e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04228 K15601 - csav:115721711 268.855