Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre13g04216 | ATGGCCAATGACTCGTCGTTTTTGTTCGCCGGCATTCGTTTCGATAGAAAGAAATTCGGCGCCGATATTGCCAGATTTCAGAAAAAAGATACTGAGAACAGTTTGGCGAAGATTCAGAGTGTGACAGAAGATGGAGAAAATAAGGAAACAATAGAAGCTGTGTCTGCAAAGAAGAGGAAGCGCAAGAAATCCTCTTCCGAAGCGGTTGACGGATTCAGTGTGTTCCGAAGTTCCACATCCAAGTCAAACAAAGAAGTCAAAGTCGATGACGACGACGATGAGTCCACTCGGCTGAAGAAAGAACAAAATAAGCAACTCGAGCGAGATGCTATCTTCAGGAAGAATCACAACATTCATGTCTCTGGTTACAATGTGCCGTCCCCACTTCAAAGCTTTGACGAGTTGAATACAAGATATAAATGTCCGTCCTATTTATTGCGGAATCTGGCAGAACTTGGATTCAGAGAACCAACACCAATCCAACGACAGGCTATTCCAGTACTCTTACAGGATCGTGAATGTTTTGCCTGTGCCCCAACTGGTTCTGGAAAAACCCTTGCATTTGTGGTTCCCATGCTCATGAAGCTCAAGGCTCATGCAAAAGATGGTGTTCGAGCTGTTATAATTTGTCATAGCCGTGAATTATCTGGTCAAACATATCGAGAGTGCAAAAAGCTTGCCAAAGGGGAAAAGTTCCGTATCAAGTTAATGACAAAACATCTTTTAAGAAATGCTGATTTTTCAAAATTTTCTTGTGATATACTTATATCCACGCCACTTCGATTACGTTTGGCTATCAAGAAGAAAAAGGTTGATCTCAGCAGAGTCGAGTATCTTGTCCTTGATGAATCTGATAAGCTATTTGAGCCTGGATTGTTCACGCAGATTGATTCTATTATCAAAGCTTGCACAAATCCCTCAATAATACGCTCTCTGTTCAGTGCTACTTTACCTGATTTTGTTGAAGATCGTGCACGAGAACTCATGCATGATGCTGTTCGGGTAATTGTTGGCAGGAAGAATATGGCTTCTGAAACAATTAAGCAAAAGTTGGTTTTTACGGGAAGCGAAGAAGGCAAACTTATAGCTATTCGGCAAAGTTTTGCAGAGAGTTTAAATCCTCCAGTATTGATCTTTGTCCAAAAAAAGGAGCGAGCCGTGGAGCTGTATGGGGAACTTGCATTCGACAATATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGAAGAGCGAGAAAATGCAGTTGACAACTTCAGAGCTGGTAAAACATGGGTTTTGATTGCCACTGATGTGGTTGCTCGGGGAATGGATTTCAAAGGCATTAACTGTGTGATCAATTTTGATTTCCCAGATTCTGCATCGGCATATATCCACAGAATTGGTCGTTCTGGCAGAGCAGGAAGGAGTGGCGAAGCGATTACATTTTACACAGAGGAGGATATTCCATTCTTGCGAAATGTAGCTAATCTAATGGCATCCTCGGGCTGTGAAGTTCCATCCTGGTTGATGGAGTTGCAGAAAAAGAAGTGGAAGAAGCACCGGCCCAGAAGAGATTCTATCTCAACCAAACCTGTAGATCAAAACGAAAAACTCAACAAAACCTGA | 1608 | 0.4204 | MANDSSFLFAGIRFDRKKFGADIARFQKKDTENSLAKIQSVTEDGENKETIEAVSAKKRKRKKSSSEAVDGFSVFRSSTSKSNKEVKVDDDDDESTRLKKEQNKQLERDAIFRKNHNIHVSGYNVPSPLQSFDELNTRYKCPSYLLRNLAELGFREPTPIQRQAIPVLLQDRECFACAPTGSGKTLAFVVPMLMKLKAHAKDGVRAVIICHSRELSGQTYRECKKLAKGEKFRIKLMTKHLLRNADFSKFSCDILISTPLRLRLAIKKKKVDLSRVEYLVLDESDKLFEPGLFTQIDSIIKACTNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLIAIRQSFAESLNPPVLIFVQKKERAVELYGELAFDNIRVDVIHSDLSQEERENAVDNFRAGKTWVLIATDVVARGMDFKGINCVINFDFPDSASAYIHRIGRSGRAGRSGEAITFYTEEDIPFLRNVANLMASSGCEVPSWLMELQKKKWKKHRPRRDSISTKPVDQNEKLNKT | 535 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre13g04216 | 535 | MobiDBLite | consensus disorder prediction | 513 | 535 | - | - | |
Trre13g04216 | 535 | Gene3D | - | 335 | 512 | IPR027417 | - | |
Trre13g04216 | 535 | SMART | ultradead3 | 153 | 350 | IPR014001 | - | |
Trre13g04216 | 535 | Pfam | DEAD/DEAH box helicase | 158 | 322 | IPR011545 | GO:0003676|GO:0005524 | |
Trre13g04216 | 535 | Gene3D | - | 74 | 334 | IPR027417 | - | |
Trre13g04216 | 535 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 165 | 480 | IPR027417 | - | |
Trre13g04216 | 535 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 165 | 335 | IPR014001 | - | |
Trre13g04216 | 535 | Pfam | Helicase conserved C-terminal domain | 370 | 468 | IPR001650 | - | |
Trre13g04216 | 535 | MobiDBLite | consensus disorder prediction | 83 | 104 | - | - | |
Trre13g04216 | 535 | MobiDBLite | consensus disorder prediction | 520 | 535 | - | - | |
Trre13g04216 | 535 | CDD | SF2_C_DEAD | 347 | 477 | - | - | |
Trre13g04216 | 535 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 134 | 162 | IPR014014 | GO:0003724 | |
Trre13g04216 | 535 | CDD | DEADc_DDX52 | 145 | 338 | IPR044764 | GO:0003724|GO:0005524|GO:0030490 | |
Trre13g04216 | 535 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 346 | 507 | IPR001650 | - | |
Trre13g04216 | 535 | SMART | helicmild6 | 387 | 468 | IPR001650 | - | |
Trre13g04216 | 535 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 61 | 514 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre13g04216 | Trre-Chr13 | 49846269 | 49851919 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre13g04216 | 128 | 506 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 30.446 | 1.08e-52 | 182 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre13g04216 | K14779 | - | gmx:100800969 | 850.506 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre13g04216 | 13 | 49846269 | 49851919 | Trre13g04216 | 13 | 49846269 | 49851919 | ECH |