Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04216 ATGGCCAATGACTCGTCGTTTTTGTTCGCCGGCATTCGTTTCGATAGAAAGAAATTCGGCGCCGATATTGCCAGATTTCAGAAAAAAGATACTGAGAACAGTTTGGCGAAGATTCAGAGTGTGACAGAAGATGGAGAAAATAAGGAAACAATAGAAGCTGTGTCTGCAAAGAAGAGGAAGCGCAAGAAATCCTCTTCCGAAGCGGTTGACGGATTCAGTGTGTTCCGAAGTTCCACATCCAAGTCAAACAAAGAAGTCAAAGTCGATGACGACGACGATGAGTCCACTCGGCTGAAGAAAGAACAAAATAAGCAACTCGAGCGAGATGCTATCTTCAGGAAGAATCACAACATTCATGTCTCTGGTTACAATGTGCCGTCCCCACTTCAAAGCTTTGACGAGTTGAATACAAGATATAAATGTCCGTCCTATTTATTGCGGAATCTGGCAGAACTTGGATTCAGAGAACCAACACCAATCCAACGACAGGCTATTCCAGTACTCTTACAGGATCGTGAATGTTTTGCCTGTGCCCCAACTGGTTCTGGAAAAACCCTTGCATTTGTGGTTCCCATGCTCATGAAGCTCAAGGCTCATGCAAAAGATGGTGTTCGAGCTGTTATAATTTGTCATAGCCGTGAATTATCTGGTCAAACATATCGAGAGTGCAAAAAGCTTGCCAAAGGGGAAAAGTTCCGTATCAAGTTAATGACAAAACATCTTTTAAGAAATGCTGATTTTTCAAAATTTTCTTGTGATATACTTATATCCACGCCACTTCGATTACGTTTGGCTATCAAGAAGAAAAAGGTTGATCTCAGCAGAGTCGAGTATCTTGTCCTTGATGAATCTGATAAGCTATTTGAGCCTGGATTGTTCACGCAGATTGATTCTATTATCAAAGCTTGCACAAATCCCTCAATAATACGCTCTCTGTTCAGTGCTACTTTACCTGATTTTGTTGAAGATCGTGCACGAGAACTCATGCATGATGCTGTTCGGGTAATTGTTGGCAGGAAGAATATGGCTTCTGAAACAATTAAGCAAAAGTTGGTTTTTACGGGAAGCGAAGAAGGCAAACTTATAGCTATTCGGCAAAGTTTTGCAGAGAGTTTAAATCCTCCAGTATTGATCTTTGTCCAAAAAAAGGAGCGAGCCGTGGAGCTGTATGGGGAACTTGCATTCGACAATATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGAAGAGCGAGAAAATGCAGTTGACAACTTCAGAGCTGGTAAAACATGGGTTTTGATTGCCACTGATGTGGTTGCTCGGGGAATGGATTTCAAAGGCATTAACTGTGTGATCAATTTTGATTTCCCAGATTCTGCATCGGCATATATCCACAGAATTGGTCGTTCTGGCAGAGCAGGAAGGAGTGGCGAAGCGATTACATTTTACACAGAGGAGGATATTCCATTCTTGCGAAATGTAGCTAATCTAATGGCATCCTCGGGCTGTGAAGTTCCATCCTGGTTGATGGAGTTGCAGAAAAAGAAGTGGAAGAAGCACCGGCCCAGAAGAGATTCTATCTCAACCAAACCTGTAGATCAAAACGAAAAACTCAACAAAACCTGA 1608 0.4204 MANDSSFLFAGIRFDRKKFGADIARFQKKDTENSLAKIQSVTEDGENKETIEAVSAKKRKRKKSSSEAVDGFSVFRSSTSKSNKEVKVDDDDDESTRLKKEQNKQLERDAIFRKNHNIHVSGYNVPSPLQSFDELNTRYKCPSYLLRNLAELGFREPTPIQRQAIPVLLQDRECFACAPTGSGKTLAFVVPMLMKLKAHAKDGVRAVIICHSRELSGQTYRECKKLAKGEKFRIKLMTKHLLRNADFSKFSCDILISTPLRLRLAIKKKKVDLSRVEYLVLDESDKLFEPGLFTQIDSIIKACTNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLIAIRQSFAESLNPPVLIFVQKKERAVELYGELAFDNIRVDVIHSDLSQEERENAVDNFRAGKTWVLIATDVVARGMDFKGINCVINFDFPDSASAYIHRIGRSGRAGRSGEAITFYTEEDIPFLRNVANLMASSGCEVPSWLMELQKKKWKKHRPRRDSISTKPVDQNEKLNKT 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04216 535 MobiDBLite consensus disorder prediction 513 535 - -
Trre13g04216 535 Gene3D - 335 512 IPR027417 -
Trre13g04216 535 SMART ultradead3 153 350 IPR014001 -
Trre13g04216 535 Pfam DEAD/DEAH box helicase 158 322 IPR011545 GO:0003676|GO:0005524
Trre13g04216 535 Gene3D - 74 334 IPR027417 -
Trre13g04216 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 480 IPR027417 -
Trre13g04216 535 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 165 335 IPR014001 -
Trre13g04216 535 Pfam Helicase conserved C-terminal domain 370 468 IPR001650 -
Trre13g04216 535 MobiDBLite consensus disorder prediction 83 104 - -
Trre13g04216 535 MobiDBLite consensus disorder prediction 520 535 - -
Trre13g04216 535 CDD SF2_C_DEAD 347 477 - -
Trre13g04216 535 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 134 162 IPR014014 GO:0003724
Trre13g04216 535 CDD DEADc_DDX52 145 338 IPR044764 GO:0003724|GO:0005524|GO:0030490
Trre13g04216 535 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 346 507 IPR001650 -
Trre13g04216 535 SMART helicmild6 387 468 IPR001650 -
Trre13g04216 535 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 61 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04216 Trre-Chr13 49846269 49851919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04216 128 506 Eukaryotic Initiation Factors Gene Family AT3G19760 30.446 1.08e-52 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04216 K14779 - gmx:100800969 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04216 13 49846269 49851919 Trre13g04216 13 49846269 49851919 ECH