Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04212 ATGGGGAAGAAGGGAAATTGGTTTTCTACAGTGAAGAAAGCTCTCAGCCCTGATTCAAAGAAATCAAGTAAATCAAAAAAGAAATGGTTTGGGAAACAAAAATTGCAGACTTCAGACCCTTCTTTAGAAACCGATACAGCACCGCCACTTCCTCCGCCAGAAGATATTAAATTAACTGATATTGAAAATCAAATCAGTCACCATAATGTTGCTGAAATTACAACTGCCGTGGTTGATGAGAAACCTGGTCCTTCTGTTCAGGCACCAGTTATTAGAACCGAAGCTGTCGTAGTTTCTCGTTTTGCCGGTAAACCAAAGGATGAAGTGGCCGCAATCAAGATTCAGACAGCTTTTCGGGGATACTTGGCGAGAAGAGCATTGCGGGCATTACGAGGGCTGGTCAGATTGAAAACATTGATGGAAGGGCCGATTGTAAAACGGCAAGCCATGAGTACCCTTCGCTCAATGCAGACATTAGCTCGTGTGCAATCTCAGATTCGTTCTAGGAGGGTTAGAATGTTAGAGGAGAATCAGGCTTTGCAGAGACAGCTCTTACAGAAGCATGCAAGAGAACTTGAGACCATGCGGATTGGAGAGGAATGGGATGCTAGCCTACAATCAAAAGAACAAATTGAAGCCAAATTATTGAGCAAGTATGAGGCTACTATGAGAAGAGAAAGAGCGTTGGCTTATGCATTCACTCATCAGCAAAATGGGAAGAACTCGTCTAGATCTATGAATCCAATGTTTGTGGATCCAACCAATCCTACATGGGGCTGGAGCTGGCTAGAACGATGGATGGCTGCCCGACCATGGGAGAGTCGTGGCCTTGCCGATAAAGAACTGAATGACCACTCATCCATTAAAAGTTCAAGCCGCAGCATTACTGGTGGAGAAATCAGCAAATCGTTTGCTCGTTTCCAGCTAAATTCTGAAATACATTCTCCAGCAGCCAGCCAAAATCCCGGCTCACCTAGCGTTCAGTCCAATTCAACTCCTACTAAGCCAGCTTCTGCAGGAGCTGCAAGGAAACTGAAGAAGGCGAGTCCAAAGGGAAGCTGGGTTATGGACGATGACTCAAAAAGCATGGCCAGTGTACAGTCAGATCGGTTCCGTAGACACTCTATTGCCGGATCATCAGTTAGAGATGATGAGAGTCTTGCTAGCTCTCCATCAGTTCCGAGTTATATGGTACCAACTCAATCTGCAAAAGCTAGGTCGAGAACACAGAGTCAAAGTCCATTAGCTAAAGAAAATGGCAAACAAGATAAGGGATCCTTTGGGACTGCAAAGAAGCGTCTTTCTTTCCCGGCTTCACCTGCCAGGCCAAGGCGTCATTCAGGTCCGCCAAAGGTAGAAACCGCGATAAATGCAGAGTTCACAGTGGAAAATGGCGTGGCAATTTGA 1407 0.4556 MGKKGNWFSTVKKALSPDSKKSSKSKKKWFGKQKLQTSDPSLETDTAPPLPPPEDIKLTDIENQISHHNVAEITTAVVDEKPGPSVQAPVIRTEAVVVSRFAGKPKDEVAAIKIQTAFRGYLARRALRALRGLVRLKTLMEGPIVKRQAMSTLRSMQTLARVQSQIRSRRVRMLEENQALQRQLLQKHARELETMRIGEEWDASLQSKEQIEAKLLSKYEATMRRERALAYAFTHQQNGKNSSRSMNPMFVDPTNPTWGWSWLERWMAARPWESRGLADKELNDHSSIKSSSRSITGGEISKSFARFQLNSEIHSPAASQNPGSPSVQSNSTPTKPASAGAARKLKKASPKGSWVMDDDSKSMASVQSDRFRRHSIAGSSVRDDESLASSPSVPSYMVPTQSAKARSRTQSQSPLAKENGKQDKGSFGTAKKRLSFPASPARPRRHSGPPKVETAINAEFTVENGVAI 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04212 468 ProSiteProfiles IQ motif profile. 107 135 IPR000048 GO:0005515
Trre13g04212 468 MobiDBLite consensus disorder prediction 1 54 - -
Trre13g04212 468 Pfam IQ calmodulin-binding motif 110 128 IPR000048 GO:0005515
Trre13g04212 468 Gene3D - 68 133 - -
Trre13g04212 468 SMART iq_5 106 128 IPR000048 GO:0005515
Trre13g04212 468 Pfam Protein of unknown function (DUF4005) 372 445 IPR025064 -
Trre13g04212 468 MobiDBLite consensus disorder prediction 315 337 - -
Trre13g04212 468 PANTHER IQ-DOMAIN 5-RELATED 1 439 - -
Trre13g04212 468 MobiDBLite consensus disorder prediction 382 419 - -
Trre13g04212 468 MobiDBLite consensus disorder prediction 315 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04212 Trre-Chr13 49821913 49824738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04212 1 467 IQD Protein Family AT5G03040 52.361 9.88e-145 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04212 - - gmx:100800080 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04212 13 49821913 49824738 Trre13g04212 13 49821913 49824738 ECH
Trre13g04212 13 49821913 49824738 Trre1g02631 1 21626419 21629299 PCT