Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04208 ATGGGAGCGGCTCGCAAGATGAGGAAACAACGGATTAAGCAACGTTGGGCGGATAAGCAATACAAAAAATCTCATTTAGGGAAAGAATGGAACAAGCCTTTTGCTGGATCATCTCATGCTAAGGGCATTGTTCTTGAAAAGATTGGTATTGAGGCTAAGCAGCCTAACTCTGCTATTCGAAAATGTGCTCGAGTTCAACTCATTAAAAATGGGAAGAAGATAGCTGCATTTGTGCCGAATGATGGTTGCTTAAATTACATTGAAGAGAATGATGAAGTTTTGATTGCTGGATTTGGACGTAAAGGTCACGCCGTGGGTGATATTCCTGGTGTTAGATTCAAGGTTGTGAAGGTTTCTGGTGTGTCTCTCCTGGCTCTTTTCAAGGAGAAGAAGGAGAAGCCTAGGTCTTAA 411 0.4234 MGAARKMRKQRIKQRWADKQYKKSHLGKEWNKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04208 136 Gene3D - 19 136 IPR012340 -
Trre13g04208 136 CDD Ribosomal_S23 20 133 IPR005680 GO:0003735|GO:0006412|GO:0015935
Trre13g04208 136 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 3 136 IPR006032 GO:0003735|GO:0005840|GO:0006412
Trre13g04208 136 Pfam Ribosomal protein S12/S23 28 135 IPR006032 GO:0003735|GO:0005840|GO:0006412
Trre13g04208 136 NCBIfam 30S ribosomal protein S12 3 135 IPR005680 GO:0003735|GO:0006412|GO:0015935
Trre13g04208 136 MobiDBLite consensus disorder prediction 1 33 - -
Trre13g04208 136 MobiDBLite consensus disorder prediction 1 16 - -
Trre13g04208 136 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 9 136 IPR006032 GO:0003735|GO:0005840|GO:0006412
Trre13g04208 136 FunFam 40S ribosomal protein S23 19 136 - -
Trre13g04208 136 ProSitePatterns Ribosomal protein S12 signature. 53 60 IPR006032 GO:0003735|GO:0005840|GO:0006412
Trre13g04208 136 SUPERFAMILY Nucleic acid-binding proteins 14 134 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04208 Trre-Chr13 49800025 49800644 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04208 1 136 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 94.118 7.52e-92 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04208 K02973 - ini:109163307 261.536