Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04203 ATGCACAGAACTGCAAAAGAAACGGAGATGATGATCCGATACGGATCCGGATCGTTTTCCATGGATACATACGAGTTAATGGACTTTTACTTTCCTCAACAACTCTTCACTGTCGAAGAAACCTGGCTCAAACTCACTTCTTCTCTTTTTTCCTTTTTTTCTTCTCCTCATGGCGAAAACATCGTTTCTCAGGTGAAAAATGAATTTGGAAACTATGTGCTGTCACTTGATTTTCAGCAGCTCAAAAGTATGTGCCATGTTGAGGAGTTTTATGAAATGTTAATGGAGAAACCTAAAATTGCTCTCTCATGCATGAGTGCTGCCGTTCACAAGGTTCTGCTTTCTGAATGGGAGAATGACAAGCTGGAGCTTACTGCAAAAGTTGACATCCGTCTTCATAACTGTCCTGAAACTATGATCGCCCTGAAGAACTTAAAAGCAGCTTATATAGACAAGCTTGTCTCAGTGCGTGGTACCGCTGTGAAAGCCAGCACTGTTAGACCCCTTGTGGTAGAAATGAGTTTTGAATGCAGTAAGTGCAAACAAAGTATTACACGTATATTTCCTGACGGAAAATTTTCACCGCCATCAAGTTGCAATTTGAATGGCTGCAAAAGCAAAATCTTCAATCCATTGCGATCTACTGCTCAAACTATTGATTTTCAGAAAATAAGGGTTCAAGAATTATTAAAGCATGAAGATCATGAGGAAGGACGAGTGCCTCGAACAGTGGAATGTGAACTTACCCAAGATCTCGTTGATTCATGCATTCCTGGAGATGTGGTAACGGTTACTGGAATTGTCAGAGGAATTAACAATTACATGGATATTGGAGGAGGAAAGTCAAAGAACAGGAACCAAGGATTTTATTATTTATATCTTGAAGCTGTATCCATGATAAATTCAAAGTCACAGTCCATATCTGATGATTCACAAGACTCTGATGCAAAAGCTAGACCAACTGAGCTGATTGATTTGTTTTCATTTTCTTCAAAGGATTTAGAATTTGTCGTGAAATTTGCAAGTGATTTTGGTCCAGATTCATTTCGGCAAATCGTTCACTCTATATGCCCTTCCATCTATGGGCATGATCTTGTTAAAGCTGGGATAACTCTAGCATTATTTGGCGGCGTACGAAAACATTCTATGGATCAGAATAAGGTTCCTGTGAGGGGAGATATTCATGTCTTAATTGTAGGTGATCCTGGTCTAGGTAAGAGCCAGTTGTTACAAGCAGCAGCAGCTGTTTCTCCACGTGGTATTTATGTCTGTGGTAATGCCACAACCAAAGCTGGCCTCACAGTAGCTGTAGTTAAGGATCCTATGACAAATGACTATGCTTTTGAGGCAGGTGCTATGGTGCTGGCTGACAGTGGATTGTGCTGTATTGATGAGTTTGATAAAATGACCGCGGAGCATCAGGCGTTGCTGGAAGCAATGGAGCAACAGTGTGTCTCTATTGCAAAGGCGGGATTGGTAGCAAGTTTATCATCCCGGACTTCTGTCTTAGCGGCTGCAAACCCCGTCGGTGGTCATTATAACCGGGCAAAAACTGTGAATGAAAATTTAAAAATGAGTGCTGCACTATTGTCCCGTTTTGATTTAATTTTCATATTGCTGGACAAGCCTGATGAACTTTTGGACAAGCGAGTCTCAGAGCACATTATGTCGCTTCATGCTGGGTGCGGGCAACACTTACAGGCATCTAAAAAGCGACGTGGAGATCCACCTTCTGCATCGCAGAATGTTGAAGTGATAGATTTGAGTGTTAGATCTGATTCTTTAATTTCAAGGTTGAAACTTGACAGACGAAGAGATACCAAATTTGCTCCATTACCCGGTCAACTTCTTCGCAAATACATTGCTTATGCAAGGAGTTTTGTCTTTCCCAGGATGTCGAAGACAGCAGCAGATATCATACAAAAGTTTTACCTAAAACTTCGAGATCATAACGTTTCGGCTGATGGTACTCCTATAACAGCAAGGCAGCTGGAAAGTCTAGTAAGGCTAGCTGAAGCTCGTGCTCGGCTGGACTTGAGAGCAGAAATAACGGCCCAAGATGCAATGGATGTTGTTGAAATCATGAAGGAATCCTTGTATGATAAATATGTTGACGAACACGGTGTTGTGGATTTTGGTCGAAGTGGGGGGATGAGTCAGCAGAAAGAAGCAAAACGCTTTCTAAATGCCCTCAATAAGCAATCAGAGCTGGAAGAGAAAGATTGTTTTTCAGTATCTGAAATATACAGTCTGGCAGATAGGATTTCCTTGAAAGTACCTGATATGGATACTTTCATCGAGAATTTAAACACCGCTGGTTATCTACTAAAAAAAGGACCAAAGACATACCAGGTGTTATCCTCTTCTTACTCGCGGAGCCAATCGTCTAGGTCAAGGGGCTAA 2403 0.4149 MHRTAKETEMMIRYGSGSFSMDTYELMDFYFPQQLFTVEETWLKLTSSLFSFFSSPHGENIVSQVKNEFGNYVLSLDFQQLKSMCHVEEFYEMLMEKPKIALSCMSAAVHKVLLSEWENDKLELTAKVDIRLHNCPETMIALKNLKAAYIDKLVSVRGTAVKASTVRPLVVEMSFECSKCKQSITRIFPDGKFSPPSSCNLNGCKSKIFNPLRSTAQTIDFQKIRVQELLKHEDHEEGRVPRTVECELTQDLVDSCIPGDVVTVTGIVRGINNYMDIGGGKSKNRNQGFYYLYLEAVSMINSKSQSISDDSQDSDAKARPTELIDLFSFSSKDLEFVVKFASDFGPDSFRQIVHSICPSIYGHDLVKAGITLALFGGVRKHSMDQNKVPVRGDIHVLIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDPMTNDYAFEAGAMVLADSGLCCIDEFDKMTAEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLIFILLDKPDELLDKRVSEHIMSLHAGCGQHLQASKKRRGDPPSASQNVEVIDLSVRSDSLISRLKLDRRRDTKFAPLPGQLLRKYIAYARSFVFPRMSKTAADIIQKFYLKLRDHNVSADGTPITARQLESLVRLAEARARLDLRAEITAQDAMDVVEIMKESLYDKYVDEHGVVDFGRSGGMSQQKEAKRFLNALNKQSELEEKDCFSVSEIYSLADRISLKVPDMDTFIENLNTAGYLLKKGPKTYQVLSSSYSRSQSSRSRG 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04203 800 Coils Coil 463 483 - -
Trre13g04203 800 Gene3D - 326 709 IPR027417 -
Trre13g04203 800 Pfam MCM OB domain 142 270 IPR033762 -
Trre13g04203 800 PRINTS Mini-chromosome maintenance (MCM) protein family signature 502 514 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre13g04203 800 PRINTS Mini-chromosome maintenance (MCM) protein family signature 529 537 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre13g04203 800 PRINTS Mini-chromosome maintenance (MCM) protein family signature 451 465 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre13g04203 800 PRINTS Mini-chromosome maintenance (MCM) protein family signature 391 406 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre13g04203 800 PRINTS Mini-chromosome maintenance (MCM) protein family signature 478 491 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre13g04203 800 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 66 737 IPR031327 GO:0003677|GO:0005524|GO:0032508
Trre13g04203 800 SUPERFAMILY Nucleic acid-binding proteins 59 272 IPR012340 -
Trre13g04203 800 Pfam MCM AAA-lid domain 616 699 IPR041562 -
Trre13g04203 800 Gene3D - 142 271 IPR012340 -
Trre13g04203 800 CDD MCM8_WHD 721 786 - -
Trre13g04203 800 ProSiteProfiles MCM family domain profile. 348 555 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre13g04203 800 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 705 IPR027417 -
Trre13g04203 800 CDD MCM8 352 698 - -
Trre13g04203 800 Gene3D - 169 219 - -
Trre13g04203 800 SMART AAA_5 392 544 IPR003593 GO:0016887
Trre13g04203 800 FunFam DNA helicase MCM8 isoform X1 169 220 - -
Trre13g04203 800 Pfam MCM P-loop domain 346 559 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre13g04203 800 SMART mcm 138 700 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04203 Trre-Chr13 49781505 49788305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04203 36 786 Core DNA Replication Machinery Family AT3G09660 72.872 0.0 1151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04203 K10737 - gmx:100784549 1274.23