Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04202 ATGTCTGACGCTCCGGCGAGTCCTGGCGGTGGTAGCCACGAAAGCGGTGAACACAGTCCTCGTTCTAACATCCGTGAACAGGATAGGTTTCTTCCAATTGCTAACATCAGTCGCATCATGAAAAAAGCTCTACCTGCTAATGGTAAAATTGCTAAAGATGCTAAAGAAACTGTTCAGGAATGTGTTTCTGAGTTCATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGTCAGAGAGAGAAGAGGAAGACGATTAACGGCGATGATTTGCTTTGGGCTATGGCTACTCTAGGGTTTGAGGATTATATTGATCCTCTTAAGATTTACCTTACAAGATACAGAGAGGGTGATACTAAGGGCTCTGCTAAGGGTGACACATCTGCTAAGAAAGATGTTCAACAAGGTTCCAACGCTCAGCTTGCTCATCAAGGCTCTTTCTCACAAGGAGTTTCTTACACAAATTCTCAGGGTCAACATATGATGGTTCCTATGCAAGGCCCAGAATAG 507 0.4477 MSDAPASPGGGSHESGEHSPRSNIREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREGDTKGSAKGDTSAKKDVQQGSNAQLAHQGSFSQGVSYTNSQGQHMMVPMQGPE 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04202 168 Gene3D Histone, subunit A 17 153 IPR009072 GO:0046982
Trre13g04202 168 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Trre13g04202 168 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Trre13g04202 168 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Trre13g04202 168 FunFam Nuclear transcription factor Y subunit B-3 19 143 - -
Trre13g04202 168 MobiDBLite consensus disorder prediction 127 161 - -
Trre13g04202 168 SUPERFAMILY Histone-fold 27 141 IPR009072 GO:0046982
Trre13g04202 168 MobiDBLite consensus disorder prediction 1 27 - -
Trre13g04202 168 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Trre13g04202 168 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 147 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trre13g04202 168 MobiDBLite consensus disorder prediction 117 168 - -
Trre13g04202 168 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04202 Trre-Chr13 49772112 49775983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04202 7 166 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.059 4.20e-83 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre13g04202 CBFD_NFYB_HMF 7.3e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04202 K08065 - gmx:100798667 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04202 13 49772112 49775983 Trre13g04202 13 49772112 49775983 ECH