Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04199 ATGGAGAGTACCCTACTCTTCTTCTACTCTTCTCTCGCACTCTCACTTTTTCTCCCTTTCTCCTCTTCTCAGATCATGCAAGGTTTTGTAAGTTTGGACTGTGGAGGTACAGAAAGTTTCACTGATGAAATTGGTCTTGAATGGACTACTGATAATAAACTTAATTATGGAGAAACAAGTACTATATCGGTTGCAAACGAGACGCGTAAGCAATACAGAACACTACGGCACTTTCCTGCTGATTCCAGGAAATATTGTTACACGCTTGATGTTATCAGTAGGACAAGGTACCTATTAAGGGCCACTTTCTTGTATGGCAACTACGACGAAAATAATGTTTATCCTAAATTTGACATTTCTGTTGGTGCTACACATTGGTCTACTATTGTTATTTCTGATGCTAATATTATAGAATCGAGAGAGCTTATATTTTTGGCTTCAAGTTCAACTGTTAGTGTATGTCTATCAAATGCAACAACTGGACAACCATTTATATCTACGCTTGAACTTCGACAATTCAACGGTTCAATTTATTTTACAGAATATGAGCAACAATTTTACCTTAGTGTATCTGCAAGGATCAATTTTGGTGCGGAGAGTGATGCTCCAATCAGGTATCCTGATGACCCTTTCGATAGAATTTGGGAGTCTGATTCTGTGAAGAAAGCAAATTATCTTGTTGATGTTGCTGCTGGAACTGAAAAGATTTCTACCAGTTTACCAATTTTTGTTAACAGAGATGACATGCCACCAATGAAAGTGATGCAGACAGCTGTAGTTGGTACAACTGGATCTCTAACTTACCGATTAAATTTGGATGGTTTTCCTGGCAATGCTTGGGCAGTCACTTATTTTGCGGAGATCGAAGATTTGCGTCCAAACGAGTCTAGAAAATTCAGGCTCGTGCTTCCAGGCCAGGCTGATCTTAGCAAGGCTATTGTAAATATCGAAGAAAATGCTCTGGGGAAATATCGTCTTTATGAACCAGGATTTACCAATTTAACCCTACCCTTTGTGCTTTCCTTTAAATTTGGCAAGACATCCGATTCATCCAAGGGACCTCTCATAAATGCCATGGAGATAAATAAGTATCTTGAGAAAAATGAAGGTTCGCCGGATGCTGCAGCTATATCTGGAGTGCTTTCTCGCTACTTTTCAGCAAACTGGACACAAGAAGGAGGCGATCCATGTCTTCCTGTTCCATGGTCATGGGTCCACTGTAGCTCAGATCCACAACCAAGAATAATTTCAATCTTGTTATCCGGTAAAAACTTGACTGGGAATATTCCTTCAGATATTACCAAATTGGTTGGTCTGGTTGAACTATGGCTTGATGGAAATATGTTGACCGGCTCAATACCAGATTTTACCGGGTGCACAGACTTAAAGATCATTCATCTTGAAAATAATCAGTTCACGGGCGTTCTCCCAGACTCTTTGGTGAATCTTCCTAGTTTGAGGGAACTATATGTTCAAAATAATATGTTATCTGGAACAGTGCCACCAAATCTTCTAAGCAAGGATTTGGTTTTAAACTATTCTGGAAACATTAACCTTCATAGAGGAAGCAAAATAAAGAGCCATATGTATATTATTATCGGTTCAGCAGTTGGTGCTTCTATTCTACTTTTGGCTACTGTTATATCTTGCTTGGTTATTCATAAAGGCAAGAGAAGATATTATGAGAAAGACCACATAGTTTCTGTCCCTACGGAAAGGCCGGCTTCTTGGAAAAGTGAGGATCCTGCAGAAGCTGCTCACTGTTTCAGTTTAGCTGAAATTGAAAGTGCTACAAACAACTTTGAGAAAAGAATCGGTTCTGGTGGTTTTGGAATTGTATACTATGGGAAACTGAAAGAAGGAAAAGAAATAGCAGTTAAAGTTCTAAGGAATAATTCCTACCAAGGCAAGCGCGAGTTCTCAAATGAGGTGACTCTTCTATCAAGAATACATCACAGAAACTTGGTACAACTTCTTGGGTATTGCCGGGAAGAAGATAATAGTATACTTGTATATGAGTTCATGCATAATGGCACTCTTAAGGAACATCTTTATGGCACTTTAGAGCACGGGCGGAGTATCAATTGGATTAAACGCCTTGAGATTGCAGAAGATGCTGCCAAAGGAATTGAATACCTTCATACAGGTTGTGTTCCTGTAGTCATCCATAGAGACTTAAAAAGCAGCAATATTCTTCTTGACAGGCAGATGAAAGCCAAGGTTTCAGATTTCGGGCTTTCCAAACTTGCAGTTGATGGAGTCTCCCATGTTTCAAGCATAGTTCGCGGGACAGTAGGATACCTGGATCCTGAGTACTATATTTCCCAACAGCTAACTGACAAGAGTGATGTTTATAGCTTTGGTGTAATTCTTCTAGAACTCATATCCGGTCAAGAAGCAATATCAAATGAAAGTTTCGGTCTTCATTGTCGAAACATTGTCCAATGGGCAAAAATACACATTGAGAGTGGAGATATACAAGGCATTATTGATCCCTTGCTAGGTAACAAGTATGACCTACAATCAATGTGGAAAATAGCAGAGAAAGCATTGATGTGTGTTCAACCTCACGGAGATATGCGGCCATCGATTTCGGAAGTTTTAAAAGAGATCCAAGATGCAATATCTATTGAGAGAGAGGCTGAAACATTAAGAGAAGGCAATTCTGATGAGGCTTCGAGAAATTCTTTTCATTCTTCCATGAATATAGGTTCAATGGATCTTGGTAGAGCTGAAAGTTTCCTTTCAATTGATGAATCCATTGCACAGCCTACGGCAAGATAG 2784 0.394 MESTLLFFYSSLALSLFLPFSSSQIMQGFVSLDCGGTESFTDEIGLEWTTDNKLNYGETSTISVANETRKQYRTLRHFPADSRKYCYTLDVISRTRYLLRATFLYGNYDENNVYPKFDISVGATHWSTIVISDANIIESRELIFLASSSTVSVCLSNATTGQPFISTLELRQFNGSIYFTEYEQQFYLSVSARINFGAESDAPIRYPDDPFDRIWESDSVKKANYLVDVAAGTEKISTSLPIFVNRDDMPPMKVMQTAVVGTTGSLTYRLNLDGFPGNAWAVTYFAEIEDLRPNESRKFRLVLPGQADLSKAIVNIEENALGKYRLYEPGFTNLTLPFVLSFKFGKTSDSSKGPLINAMEINKYLEKNEGSPDAAAISGVLSRYFSANWTQEGGDPCLPVPWSWVHCSSDPQPRIISILLSGKNLTGNIPSDITKLVGLVELWLDGNMLTGSIPDFTGCTDLKIIHLENNQFTGVLPDSLVNLPSLRELYVQNNMLSGTVPPNLLSKDLVLNYSGNINLHRGSKIKSHMYIIIGSAVGASILLLATVISCLVIHKGKRRYYEKDHIVSVPTERPASWKSEDPAEAAHCFSLAEIESATNNFEKRIGSGGFGIVYYGKLKEGKEIAVKVLRNNSYQGKREFSNEVTLLSRIHHRNLVQLLGYCREEDNSILVYEFMHNGTLKEHLYGTLEHGRSINWIKRLEIAEDAAKGIEYLHTGCVPVVIHRDLKSSNILLDRQMKAKVSDFGLSKLAVDGVSHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNESFGLHCRNIVQWAKIHIESGDIQGIIDPLLGNKYDLQSMWKIAEKALMCVQPHGDMRPSISEVLKEIQDAISIEREAETLREGNSDEASRNSFHSSMNIGSMDLGRAESFLSIDESIAQPTAR 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04199 927 FunFam Leucine-rich repeat receptor-like protein kinase 577 674 - -
Trre13g04199 927 FunFam Leucine-rich repeat protein kinase family protein 374 526 - -
Trre13g04199 927 CDD STKc_IRAK 605 872 - -
Trre13g04199 927 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 675 884 - -
Trre13g04199 927 SUPERFAMILY L domain-like 400 506 - -
Trre13g04199 927 Pfam Leucine rich repeat 443 496 IPR001611 GO:0005515
Trre13g04199 927 Gene3D Transferase(Phosphotransferase) domain 1 675 896 - -
Trre13g04199 927 Pfam Malectin-like domain 32 362 IPR024788 -
Trre13g04199 927 Pfam Protein tyrosine and serine/threonine kinase 601 801 IPR001245 GO:0004672|GO:0006468
Trre13g04199 927 ProSitePatterns Serine/Threonine protein kinases active-site signature. 721 733 IPR008271 GO:0004672|GO:0006468
Trre13g04199 927 Gene3D Phosphorylase Kinase; domain 1 572 674 - -
Trre13g04199 927 SUPERFAMILY Protein kinase-like (PK-like) 584 869 IPR011009 -
Trre13g04199 927 Gene3D Ribonuclease Inhibitor 375 529 IPR032675 -
Trre13g04199 927 SMART serkin_6 599 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04199 927 PANTHER OS07G0107800 PROTEIN-RELATED 459 875 - -
Trre13g04199 927 ProSitePatterns Protein kinases ATP-binding region signature. 605 627 IPR017441 GO:0005524
Trre13g04199 927 ProSiteProfiles Protein kinase domain profile. 599 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04199 Trre-Chr13 49747778 49752594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04199 21 709 Receptor kinase-like Gene Family AT2G37050 67.816 0.0 983
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre13g04199 Malectin_like 5.9e-78 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04199 - - gmx:100784017 1612.05