Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04198 ATGTTGGATCTCAATCTCAACGCTCATTCCGCTTTCGATAACTACACTTTCCCACTCTCCGCCACCGCTCAAATGGAAAGCTCCGGTAGCTTTGATTCCTCCGTCGTCAACACCGCCGACACTGAAGATTCTTCCTCTTACGGCGATGCTTACGCTTACAACTTCGCCATACTCAACAACAACAGCAACAACGAAAACAGTTTCGTTGACAACGCTACAATCTGCGGTGAACTTCAACATTCCGGCGCCGGTGAATCTGCTGTACGGACAATTCAACTTTTTCCTGCTAACGAATCAGGATTAATCTCGCCGTCTGAGAATAGAGGATGGATGAATTTTCCGTCGGATCATCACGGCGGTGTAACGGAGCAGACTGTTGTTGTTGCTCCACGACCACAACAAGTGAAGAAGAGTCGCCGTGGACCGAGGTCGCGAAGCTCACAGTATCGTGGCGTTACTTTCTACCGGAGAACAGGACGATGGGAATCGCATATTTGGGATTGTGGAAAGCAAGTGTACTTAGGTGGATTTGACACCGCACATGCTGCAGCAAGAGCTTATGATCGAGCTGCGATCAAGTTTCGTGGAGTTGATGCGGATATAAATTTCAATGTGAGCGATTATGATGAAGATATCAAGCAGATGAGTAACTTTACCAAGGAAGAGTTTGTGCATATTCTGCGTAGACAGAGTACTGGTTTCTCAAGGGGAAGCTCCAAATACAGGGGAGTTACTCTGCATAAATGTGGAAGATGGGAAGCTCGTATGGGACAGTTTCTTGGGAAGAAGTATATATATCTTGGGCTTTTCGATAGCGAGCTAGACGCTGCAAGAGCATATGATAAGGCTGCTATAAAATGCAATGGAAGAGAAGCAGTGACAAATTTTGAGGCAAGTACTTATGAAGGAGAGTTAATTTCCCAGTGTGATAATGAAGATAGCAAGCAGAATCTTGATCTGAACTTGGCTATAGCTCCTCCTTCTAACTCTGATGTTCAAATGATGAACATGCAACACAATGGAAGTGGTTTACAAGTTCAGCGTAGCTGGGATGATATGCCTGTTGATAAGAGTGTTTTGTTTGAGGACTCTGGGTCAAGATCAGTCAATGTTCAGTCATCTTATGGTTTTTCCATAGCATCTGAGCATCAACCTCCAGTATGGAGTGGTACTGGTAGCAATTACTTTCCCATGTGTAAGGAAAGAGCAATAGAGAATAGGATGGAATCTTCTCCAGTTCCAAATTGGGCATGGCAACTCCAAAGTCCTTATAATAATGGGTCAACTTTGATTCCACCTAATTTCTCTGCTGCAGCATCATCAGGATTCCCTTCAACTACAACAATACCTTCAGCTGCGGATAGTCAAATTCATTTTGCAAACATGAATTTCCACCCTCATTTTCCTCCTCAAATGACCAACTCCAGCACCATACCTCCTTTCTACTGCAGGAGCTGA 1458 0.4444 MLDLNLNAHSAFDNYTFPLSATAQMESSGSFDSSVVNTADTEDSSSYGDAYAYNFAILNNNSNNENSFVDNATICGELQHSGAGESAVRTIQLFPANESGLISPSENRGWMNFPSDHHGGVTEQTVVVAPRPQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELDAARAYDKAAIKCNGREAVTNFEASTYEGELISQCDNEDSKQNLDLNLAIAPPSNSDVQMMNMQHNGSGLQVQRSWDDMPVDKSVLFEDSGSRSVNVQSSYGFSIASEHQPPVWSGTGSNYFPMCKERAIENRMESSPVPNWAWQLQSPYNNGSTLIPPNFSAAASSGFPSTTTIPSAADSQIHFANMNFHPHFPPQMTNSSTIPPFYCRS 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04198 485 Pfam AP2 domain 239 289 IPR001471 GO:0003700|GO:0006355
Trre13g04198 485 Pfam AP2 domain 148 196 IPR001471 GO:0003700|GO:0006355
Trre13g04198 485 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 115 330 - -
Trre13g04198 485 FunFam AP2-like ethylene-responsive transcription factor 147 206 - -
Trre13g04198 485 CDD AP2 148 206 IPR001471 GO:0003700|GO:0006355
Trre13g04198 485 SUPERFAMILY DNA-binding domain 147 206 IPR016177 GO:0003677
Trre13g04198 485 ProSiteProfiles AP2/ERF domain profile. 148 204 IPR001471 GO:0003700|GO:0006355
Trre13g04198 485 SUPERFAMILY DNA-binding domain 239 298 IPR016177 GO:0003677
Trre13g04198 485 CDD AP2 239 299 IPR001471 GO:0003700|GO:0006355
Trre13g04198 485 PRINTS Ethylene responsive element binding protein signature 279 299 IPR001471 GO:0003700|GO:0006355
Trre13g04198 485 PRINTS Ethylene responsive element binding protein signature 241 252 IPR001471 GO:0003700|GO:0006355
Trre13g04198 485 ProSiteProfiles AP2/ERF domain profile. 240 297 IPR001471 GO:0003700|GO:0006355
Trre13g04198 485 Gene3D AP2/ERF domain 147 206 IPR036955 GO:0003700|GO:0006355
Trre13g04198 485 Gene3D AP2/ERF domain 239 298 IPR036955 GO:0003700|GO:0006355
Trre13g04198 485 SMART rav1_2 148 210 IPR001471 GO:0003700|GO:0006355
Trre13g04198 485 SMART rav1_2 240 303 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04198 Trre-Chr13 49708791 49711268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04198 119 338 AP2-EREBP Transcription Factor Family AT4G36920 72.851 3.89e-96 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Trre13g04198 AP2 1.1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04198 K09284 - gmx:100797238 637.491