Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04192 ATGGATATTGAAGAAGTAGAAAGAGTAATTGTTGCAAAACCAGTTGCTTCAAGACCAAAATGTACTACTTACAAATCTTTCTCAGAGCTTCTAGCAGGTGCAATCAATGACACTCCTCCAATTGTATCTTCTCAAACTACAGTTTCTGCCATTAGACCAAAGACAGTGAGGTTCAAGCCAACATTGAATCTCCCCCATGCTGGATCTATTTCTTCTCAGTCTGACATGGATCCCAAACCTGACACCAATCAGTCTCTCATTTACAAGCCAACGGCAAAGTTTGTGTCAAAGACAACCGTCTCTCTCTTGGCAAAAATGGGAATTTGCAATAATAATCTGCAACAATCACCGCAATCAGTGGAGACCAATCTTCAACATCTAAACCATGACAAATTTAGATCCAATATGAGCTCAAATTTTCATCAGAACATTACCCTTCCAAAAGAAACATACCACCAGGCCATTGAACCTTGTAAGACGGCACAGCAGAACATGGAAGAGGACCAAAAAGCTTTACCATCATCCACAATGAATGCTGATAGACCTTCTTATGATGGATATAACTGGAGAAAATATGGACAGAAGCAAGTAAAAGGAAGCGAGTATCCTCGAAGTTATTATAAGTGTACACATCCTAACTGTCCAGTTAAAAAGAAAGTTGAAAGATCATTAGATGGTGAGATTGCAGAAATTGTTTATAAAGGTGAACACAATCATGGAAAGCCGCAACTTCAAAAGCGTAACGCAGGAGTGGCACAAGGATCAGGAATGGTTTCTGATGGATTGGTTCAAGATATGAATAATAATAATCAGAATGAAAGGATTGAAGGAAGAATGGAGAATCATGTCAAATCTTCACAGCCTAATGATTCTGCTCTAGAAAATTCATGCGGTCTAAGCGGGGAATGTGATGAAGGAAGCAAAGGATTTGAGGGAGAGGAAGATGATCCTAGAAGTAAAAGAAGGAAAAATGATAATCAATCAAATGAAGGAGCAGTATCAGAGGAAGATTTAGTAGAGCCACGCATTGTGATGCAAAATTCTGTCGATTCTGAAATCCTTGGAGACGGCTTTCGCTGGAGGAAATATGGACAGAAGGTGGTGAAGGGAAATCCATATCCCAGAAGTTACTATAGATGTACTAATATCAAGTGTAACGTTCGCAAACATGTGGAAAGAGCGATAGATGACCCAAAATCATTTGTGACTACATATGAAGGAAAGCACAACCATGAGATGCCACTCAAGAACACAACAGCAACTGTGTCCTCTGAAAAAGATTCACAGGCTTCTCTTAGTAAAGACAAACCATACTGA 1317 0.3941 MDIEEVERVIVAKPVASRPKCTTYKSFSELLAGAINDTPPIVSSQTTVSAIRPKTVRFKPTLNLPHAGSISSQSDMDPKPDTNQSLIYKPTAKFVSKTTVSLLAKMGICNNNLQQSPQSVETNLQHLNHDKFRSNMSSNFHQNITLPKETYHQAIEPCKTAQQNMEEDQKALPSSTMNADRPSYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSLDGEIAEIVYKGEHNHGKPQLQKRNAGVAQGSGMVSDGLVQDMNNNNQNERIEGRMENHVKSSQPNDSALENSCGLSGECDEGSKGFEGEEDDPRSKRRKNDNQSNEGAVSEEDLVEPRIVMQNSVDSEILGDGFRWRKYGQKVVKGNPYPRSYYRCTNIKCNVRKHVERAIDDPKSFVTTYEGKHNHEMPLKNTTATVSSEKDSQASLSKDKPY 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04192 438 MobiDBLite consensus disorder prediction 311 330 - -
Trre13g04192 438 FunFam WRKY transcription factor 57 340 414 - -
Trre13g04192 438 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 122 429 IPR044810 GO:0003700
Trre13g04192 438 SUPERFAMILY WRKY DNA-binding domain 180 242 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g04192 438 FunFam WRKY transcription factor 168 243 - -
Trre13g04192 438 Pfam WRKY DNA -binding domain 185 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g04192 438 Pfam WRKY DNA -binding domain 356 412 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g04192 438 SMART WRKY_cls 354 413 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g04192 438 SMART WRKY_cls 183 241 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g04192 438 Gene3D WRKY domain 340 415 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g04192 438 Gene3D WRKY domain 167 243 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g04192 438 SUPERFAMILY WRKY DNA-binding domain 348 414 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g04192 438 MobiDBLite consensus disorder prediction 260 274 - -
Trre13g04192 438 ProSiteProfiles WRKY domain profile. 349 414 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g04192 438 ProSiteProfiles WRKY domain profile. 185 242 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g04192 438 MobiDBLite consensus disorder prediction 414 428 - -
Trre13g04192 438 MobiDBLite consensus disorder prediction 234 341 - -
Trre13g04192 438 MobiDBLite consensus disorder prediction 405 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04192 Trre-Chr13 49671497 49674234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04192 77 415 WRKY Transcription Factor Family AT2G37260 44.904 8.35e-86 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre13g04192 WRKY 6.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04192 - - gmx:100794069 649.818