Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04189 ATGGGTTGGATTCCTTGTTCTGGAAATTCAGGAACTAAGAAGAAGATTGTGAAGAAGATGGAAGTTCAAGATAGTCTCACTCGTCAAATTAAAGCTAATCCAGCTCAAGGGAAATTGAAGAGGAGTTCATCAACAAATTCCAAGGATACATCTAAACAAGGGAACAATGAACACATTGCAGCTCAAACTTTCTCATTCCGCGAGTTGGCAATTGCAACTAGAAATTTTAGAGCTGAATGTCTTTTGGGTGAGGGAGGCTTTGGTAGAGTATACAAAGGGCATCTCGAAAGTATTAATCAGGTTGTCGCAATCAAGCAACTTGACCGAAACGGACTCCAAGGGAATAGAGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTACTTCACCATCCTAATCTTGTCAACCTTATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATATATGTCATTAGGATCCTTGGAAGACCACTTGCATGATTTATCTCCTAGCAAGAAACGACTTGACTGGAACATGCGAATGAAAATAGCCGCTGGGGCTGCAAAGGGATTGGAATATTTACACGACAAAGCTAATCCTCCGGTCATATACCGAGATTTAAAATGCTCCAACATTTTGCTTGGTGAAGGGTATCACCCTAAGTTATCTGATTTTGGCTTGGCCAAACTTGGCCCGGTCGGAGAAAACACCCATGTATCGACAAGGGTTATGGGCACCTATGGATATTGTGCTCCAGAGTATGCAATGACCGGTCAACTTACTCTCAAATCAGATGTTTATAGCTTTGGTGTAGTTCTTCTCGAAATAATCACAGGAAGGAAAGCTATTGACAATTCGAAATCTGCAGCGGAGCAGAATCTTGTTGCATGGGCTAGACCATTGTTCAAAGATCGAAGGAAATTTTCACAAATGGCTGATCCGATGCTTCAAGGTCAGTATCCTTCGAGAGGGCTATATCAGGCCCTTGCTGTTGCAGCAATGTGTGTTCAAGAACAAGCTAATATGCGTCCGGTTATAGCTGATGTTGTCACAGCTTTGTCTTACCTTGCTTTGCAAAGACACGATCACAATACGCAGACAGTCCAAAACTCTCGCCTCGCTCCTGGTACTCCCTCTAGAACCAGGAGGGGGCGATGA 1149 0.4273 MGWIPCSGNSGTKKKIVKKMEVQDSLTRQIKANPAQGKLKRSSSTNSKDTSKQGNNEHIAAQTFSFRELAIATRNFRAECLLGEGGFGRVYKGHLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMSLGSLEDHLHDLSPSKKRLDWNMRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAAEQNLVAWARPLFKDRRKFSQMADPMLQGQYPSRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLALQRHDHNTQTVQNSRLAPGTPSRTRRGR 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04189 382 PIRSF ILK 13 367 - -
Trre13g04189 382 SMART serkin_6 76 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04189 382 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524
Trre13g04189 382 FunFam Serine/threonine-protein kinase PBS1 48 152 - -
Trre13g04189 382 MobiDBLite consensus disorder prediction 361 382 - -
Trre13g04189 382 CDD STKc_IRAK 82 350 - -
Trre13g04189 382 PANTHER OS07G0668900 PROTEIN 28 363 - -
Trre13g04189 382 Gene3D Phosphorylase Kinase; domain 1 45 152 - -
Trre13g04189 382 MobiDBLite consensus disorder prediction 26 57 - -
Trre13g04189 382 Gene3D Transferase(Phosphotransferase) domain 1 153 373 - -
Trre13g04189 382 MobiDBLite consensus disorder prediction 25 57 - -
Trre13g04189 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Trre13g04189 382 FunFam Serine/threonine-protein kinase PBS1 153 368 - -
Trre13g04189 382 ProSiteProfiles Protein kinase domain profile. 76 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04189 382 SUPERFAMILY Protein kinase-like (PK-like) 62 363 IPR011009 -
Trre13g04189 382 Pfam Protein tyrosine and serine/threonine kinase 80 348 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04189 Trre-Chr13 49649023 49651888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04189 31 353 Glycoside Hydrolase AT3G07070 68.421 5.34e-166 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Trre13g04189 PK_Tyr_Ser-Thr 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04189 - - gmx:100499648 684.871