Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04175 ATGCTTCCTTTCTTCAACCAAACTATGGAACTTGTTCCCAATCCCATCAGAACTCGAAACCATCTGTCTCCGACACTCGGAGAACTCCTCAAACGCGTCGAAGATGCTCAAAACGACAACAAAATTGCCGATCAACCTGACCATATTCTCGACGTTTCTTCCTCCTCTTCTTCCACTACCCTTCCCCCACCATTTTTCCTTTCTTTCACCAACTTAACTTACAGTGTCAAGCTCAAAAGTAAGATTTCTTGTTTTTCCTCAAAACAAAATTCTCTTCCAACTGATCTAGAATCCGAAACAAAACCAAATGGTACAAAGATTCTCCTCAACGGCATATCAGGTGAAGCCAGGGACGGCGAGATCATGGCAGTTCTCGGCGCAAGTGGCTCTGGCAAGTCAACTTTAATTGATGCTCTTGCAGATAGAATTTCCAAAGATTCTCTCAAAGGAACGGTGACACTAAACGGCGACGTTTTGGAGTCAAGTCTTCAGAAGGTGATTTCGGCTTATGTTATGCAAGACGATCTTCTCTTCCCAATGCTCACCGTAGAAGAAACTCTCATGTTCTCAGCCGAATTTCGACTCCCTCGCTCCCTCTCAAAATCAAAGAAAAAGGCTCGCGTCCAAGCATTAATCGATCAACTCGGTCTCCGAAACGCCGCCTCAACTGTCATAGGCGACGAAGGTCACCGCGGTGTTTCCGGTGGAGAACGCCGCCGTGTCTCAATCGGAACAGACATCATTCACGATCCAATCATTTTGTTCTTAGATGAACCAACCTCCGGATTGGATTCCACCAGTGCTTACATGGTGGTGAAAGTTTTGCAGCGAATTGCTCAGAGTGGTAGCATTGTTATGATGTCAGTTCATCAACCAAGCTACAGAATCCTCGGTTTATTAGACCGTTTAATCTTCCTCTCTCACGGTCAAACCGTCTACAGCGGTTCTCCAGTGAATCTCCCTAATTTCTTCTCCGAATTCGGCCATCCTATACCGGAAAACGAAAACCGCACAGAATTCGCATTAGATCTGATCCGTGAACTTGAAGGAACTCCTGGAGGAACCAAAAGTCTCGTCGAGTTCAACAAATCATGGCAGTTAAAAAATCAACCACCGTCTGCAACCGTCGTTCCTAACGGACCAAAACTGTCGTTAAAAGACGCCATCAGCGCAAGTATCTCAAGAGGCAAATTAGTTTCAGGAACTAACGGCGGAAACGGAAATTCAACTGCATCATCAGTTGCCACGTTTGCAAATCCATTTTGGATTGAAATGGCGGTTATTGGAAAACGATCTCTAACAAACTCAAGGCGGATGCCGGAATTATTCGGTATCCGTCTCGGTGCAGTTCTAGTCACCGGAGGAATCTTAGCCACTGTGTTCTATCATCTTGACAATTCACCAAAAGGTGTTCAAGAAAGATTAGGATTCTTCGCATTCGCCATGTCAACAACCTTCTACACTTGTGCTGAAGCAATTCCAGTATTCCTCCAAGAACGTTACATCTTCATGAGAGAAACTGCTTACAATGCTTACCGTAGATCTTCCTATGTCCTTGCTCACTCCATCATCTCCCTCCCTGCACTTATCTTCCTCTCATTCGCCTTCGCCGTCACAACTTTCTGGTAG 1629 0.453 MLPFFNQTMELVPNPIRTRNHLSPTLGELLKRVEDAQNDNKIADQPDHILDVSSSSSSTTLPPPFFLSFTNLTYSVKLKSKISCFSSKQNSLPTDLESETKPNGTKILLNGISGEARDGEIMAVLGASGSGKSTLIDALADRISKDSLKGTVTLNGDVLESSLQKVISAYVMQDDLLFPMLTVEETLMFSAEFRLPRSLSKSKKKARVQALIDQLGLRNAASTVIGDEGHRGVSGGERRRVSIGTDIIHDPIILFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVMMSVHQPSYRILGLLDRLIFLSHGQTVYSGSPVNLPNFFSEFGHPIPENENRTEFALDLIRELEGTPGGTKSLVEFNKSWQLKNQPPSATVVPNGPKLSLKDAISASISRGKLVSGTNGGNGNSTASSVATFANPFWIEMAVIGKRSLTNSRRMPELFGIRLGAVLVTGGILATVFYHLDNSPKGVQERLGFFAFAMSTTFYTCAEAIPVFLQERYIFMRETAYNAYRRSSYVLAHSIISLPALIFLSFAFAVTTFW 542
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04175 542 Gene3D - 95 324 IPR027417 -
Trre13g04175 542 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 51 542 - -
Trre13g04175 542 Pfam ABC-2 type transporter 427 542 IPR013525 GO:0016020|GO:0140359
Trre13g04175 542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 326 IPR027417 -
Trre13g04175 542 Pfam ABC-2 type transporter 290 369 IPR043926 GO:0140359
Trre13g04175 542 SMART AAA_5 118 346 IPR003593 GO:0016887
Trre13g04175 542 FunFam ABC transporter G family member 6 98 324 - -
Trre13g04175 542 ProSitePatterns ABC transporters family signature. 233 247 IPR017871 GO:0005524|GO:0016887
Trre13g04175 542 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 94 333 IPR003439 GO:0005524
Trre13g04175 542 Pfam ABC transporter 109 261 IPR003439 GO:0005524
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre13g04175 Trre-Chr13 49549305 49551007 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04175 108 293 Calmodulin-binding Proteins AT2G36910 29.101 4.51e-10 60.8
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04175 K05681 - gmx:100781319 790.03