Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04165 ATGACTATATCTTGCTGGAAACCAACTGTGGAAGGTGATGATGGTGATGTGAAAGGGAAAATTGATGGATTGTTATGGTATAAGGATTTGGGGAACCATCTTTATGGTGAATTTTCAATGGCTGTAATTCAAGCTAATAGTTCATTGGAGGATCGTAGTCAATTTGAATCTGGACCCTTAAGTTCTGATTATTTAGGTCCTCATGGAACCTTTATAGGTGTTTATGATGGTCATGGTGGAGCTGCAGCTGCTCAGTTTGTTAATGATAATCTATTCTCCAATTTCAAGAATTTTGCAGCTGAAGATCAAGGTGTTTCGGAAAAGGTTATAAGAAGGGCATTTTCTGCAACAGATGATGGTTTTCTGTCTCTTGTAAAGAAGCAGTGGCTAACCAAGTCACAGATAGCATCCGCTGGTACATGTTGTTTGGCGGGGATAATTTGCAACGGTAATTTGTATATTGCAAATGCTGGAGATTCAAGAGCGGTGTTAGGAAGAGTGAGGAGGGGAACAAAAGAAACATTAGCTGTTCAGTTATCAGTAGAACACAATGTTAACATAGATACCGAGAGAGACGATGTTCGTTCGAAGCACCCCTATGATCCACAAATTGTGGTTATGAAACATTCAGTTTGGCGTGTGAAAGGCATCATACAGGTTTCAAGATCCATAGGTGATGCATATTTAAAGAAAGCAGAATTTAACAGGGAGCCTTTGCCACTTAAGTTCCGATTACCTGAAACCTTTTTCAAGCCAATTCTTAGTAGTGAGCCATCGATATCAGTTCATAAAATCCAACCTGAAGATCAATTTCTCATCTTTGCTTCTGATGGTTTATGGGAGCATCTTAGCAGCCAAACAGCTGTCAATATCGTTAGCAATAGTCCGCGCAATGGAATAGCTAGACGACTTGTGAAAGCAGCACTCAAAGAAGCGGCTAAGAAAAGAGAAATAAGATTCTCAGACCTTCAAAAGATTGAACAAGGAGTGAGGAGACACTTTCACGATGATATTACAGTAATTGTTGTATATCTAAATCCTAAACTGATTGATAATAGCGCTCAATGTATTTCACCACTTTCGATCAAAGACCGTAGGCATGTCAATTCTTAG 1113 0.3926 MTISCWKPTVEGDDGDVKGKIDGLLWYKDLGNHLYGEFSMAVIQANSSLEDRSQFESGPLSSDYLGPHGTFIGVYDGHGGAAAAQFVNDNLFSNFKNFAAEDQGVSEKVIRRAFSATDDGFLSLVKKQWLTKSQIASAGTCCLAGIICNGNLYIANAGDSRAVLGRVRRGTKETLAVQLSVEHNVNIDTERDDVRSKHPYDPQIVVMKHSVWRVKGIIQVSRSIGDAYLKKAEFNREPLPLKFRLPETFFKPILSSEPSISVHKIQPEDQFLIFASDGLWEHLSSQTAVNIVSNSPRNGIARRLVKAALKEAAKKREIRFSDLQKIEQGVRRHFHDDITVIVVYLNPKLIDNSAQCISPLSIKDRRHVNS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04165 370 ProSiteProfiles PPM-type phosphatase domain profile. 34 345 IPR001932 -
Trre13g04165 370 CDD PP2Cc 35 345 IPR001932 -
Trre13g04165 370 SUPERFAMILY PP2C-like 46 346 IPR036457 -
Trre13g04165 370 Gene3D - 28 355 IPR036457 -
Trre13g04165 370 FunFam Phosphatase 2C family protein 26 355 - -
Trre13g04165 370 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Trre13g04165 370 SMART PP2C_4 31 343 IPR001932 -
Trre13g04165 370 Pfam Protein phosphatase 2C 67 314 IPR001932 -
Trre13g04165 370 PANTHER PROTEIN PHOSPHATASE 35 344 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04165 Trre-Chr13 49486071 49488403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04165 1 362 PP2C-type Phosphatase Gene Family AT3G12620 65.753 1.41e-178 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04165 K01102 - gmx:100815902 576.244