Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04162 ATGGAAATCACCATTGTAGCTTGTGCTTTCTTTGTGATTTTCACTACATTTTTCAACCCTTCTTCTCTTGCTCTCACTCAAGATGGTCAAACGTTGTTGGAGATCAAAAACACTTTGAATGACACAAAGAATGTTCTTAGCAATTGGCAAGAGTTTGATGAATCTCACTGTGCATGGACTGGAATCTCATGTCATCCTGGTGATGAACAAAGAGTTCTCTCAATAAATCTACCATATATGCAGCTTGGGGGAATAATATCTCCCAGCATTGGTAAACTCAATAGACTTCAGAGATTGGCACTACATCAGAATGGCTTGCATGGAATCATTCCTACTGAGATTACCAATTGTACTGAGCTTAGAGCCCTGTACTTGAGGGCTAATTTCTTCCAAGGAGGGATACCAGCTGGCATCGGAAACCTTTCATTTTTAAATATATTGGATGTATCAAGCAATGGATTAAAAGGAGCTATTCCATCCTCTATTGGCCGTCTCTCACATTTGCAAGTTTTGAACTTGTCTACCAATTTCTTTTCTGGTGAAATCCCTGACATTGGAGTACTAAGCACCTTCCAGAAGAACTCGTTTTTTGGCAATTCAGATCTTTGTGGAAGGCAAATACAAAAGCCATGTCGAACATCACTTGGTTTCCCTGTGGTGATACCACATGCCGAAAGTGACGAAGTTGCAGTCCCTACTACCAAAAGATCTTCACATTACATGAAGGCTGTGCTAATTGGGGCAGTGGCAACTTTGGGTCTCGCACTAATCATAACCCTTTCATTACTCTTGATTCGTTCGACATCAAAGAAGGAAAGAGCTGCTAAGAAATACACCGAAGTCAAGAAGCAAGTTGATCCATCAGCAAGCGCTAAACTTATTACGTTCCATGGTGATATGCCATACACATCATCTGAAATCATAGAAAAGCTGGAGTCTCTAGATGAAGAGGATATAGTAGGGTCAGGAGGATTTGGCACTGTTTATCGAATGGTGATGAATGATTGTGGTACATTTGCTGTTAAGCGGATTGACCGAAGCCGGGAAGGGTCTGATCAAGTGTTTGAAAGGGAACTAGAGATCTTGGGCAGCATCAAGCACATAAATTTAGTAAATCTACGTGGTTACTGCAGGCTACCTTCTTCAAGGCTACTTATCTATGATTATGTGGCCTTAGGCAGCTTAGATGATCTCTTGCACGAAAATACTGAACGACAACCCTTGAATTGGAATGATCGGCTAAAGATAACCCTTGGTTCTGCCCGGGGTTTGGCATACTTGCACCATGAATGTTCCCCAAAAATTGTGCATCGTGACATAAAGTCTAGCAACATCCTTCTTAATGAAAACATGGAGCCTCACATCTCTGATTTTGGTCTTGCAAAGCTCTTGGTTGATGAAGATGCACATGTTACCACGGTGGTAGCCGGCACATTTGGCTATTTGGCACCTGAGTATCTACAAAGTGGGAGAGCCACTGAGAAGTCAGATGTATACAGCTTTGGAGTTCTATTACTCGAACTTGTAACTGGAAAGAGGCCTACGGATCCTTCTTTTGTCAAGAGAGGTTTAAATGTTGTTGGCTGGATGAATACATTATTGAAAGAAAACAGATTGGAAGATGTGGTAGACAGAAGATGCAGTGGTGTCGATGCTGAAACTCTTGAAGTAATTTTGGAGCTAGCAGCAAGATGTACTGATTCAAATGCAGATGACCGTCCTTCGATGAATCAAGTATTGCAGTTGCTGGAACAAGAAGTCATGTCTCCTTGTCCAAGTGAATTTTACGAGTCCCATTCAGATCTCTGA 1809 0.4168 MEITIVACAFFVIFTTFFNPSSLALTQDGQTLLEIKNTLNDTKNVLSNWQEFDESHCAWTGISCHPGDEQRVLSINLPYMQLGGIISPSIGKLNRLQRLALHQNGLHGIIPTEITNCTELRALYLRANFFQGGIPAGIGNLSFLNILDVSSNGLKGAIPSSIGRLSHLQVLNLSTNFFSGEIPDIGVLSTFQKNSFFGNSDLCGRQIQKPCRTSLGFPVVIPHAESDEVAVPTTKRSSHYMKAVLIGAVATLGLALIITLSLLLIRSTSKKERAAKKYTEVKKQVDPSASAKLITFHGDMPYTSSEIIEKLESLDEEDIVGSGGFGTVYRMVMNDCGTFAVKRIDRSREGSDQVFERELEILGSIKHINLVNLRGYCRLPSSRLLIYDYVALGSLDDLLHENTERQPLNWNDRLKITLGSARGLAYLHHECSPKIVHRDIKSSNILLNENMEPHISDFGLAKLLVDEDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFVKRGLNVVGWMNTLLKENRLEDVVDRRCSGVDAETLEVILELAARCTDSNADDRPSMNQVLQLLEQEVMSPCPSEFYESHSDL 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04162 602 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Trre13g04162 602 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524
Trre13g04162 602 Gene3D Ribonuclease Inhibitor 25 213 IPR032675 -
Trre13g04162 602 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 390 595 - -
Trre13g04162 602 ProSiteProfiles Protein kinase domain profile. 314 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04162 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Trre13g04162 602 Gene3D Transferase(Phosphotransferase) domain 1 391 593 - -
Trre13g04162 602 SUPERFAMILY Protein kinase-like (PK-like) 296 584 IPR011009 -
Trre13g04162 602 Gene3D Phosphorylase Kinase; domain 1 272 389 - -
Trre13g04162 602 SMART serkin_6 314 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04162 602 Pfam Protein kinase domain 316 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04162 602 SUPERFAMILY L domain-like 25 188 - -
Trre13g04162 602 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 188 - -
Trre13g04162 602 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 74 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04162 Trre-Chr13 49457036 49460551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04162 7 592 Receptor kinase-like Gene Family AT2G35620 48.810 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Trre13g04162 Pkinase 3.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04162 - - gmx:100803920 1020.76