Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04150 ATGGCAATGAAAAGACAAAGGAGCAATGAAAACATAGATTTAGTAAATTGTCTAATGCTACTTTCTTGTCCACAACAAAAAACCATTGAAAATGGTGAATATGAATGCAAAACATGTAACAAAAAATTCTTATCTTTTCAAGCACTTGGTGGCCATAGAGCTAGTCACAAGAGAGTTAAATTATCTGAAGGCGAAGAACTCAAAGAACAAGCAAAATCTCTTAGTTTGTGGAATAAACCCAAAATGCATGAGTGTTCTATTTGTGGTATGGGATTTTCTTTGGGTCAAGCATTAGGAGGACACATGAGAAAACATAGAGCTCTAATCAATGAAGGAGTTTCTTCTATCAATGAAATTATTTCAAAAATTCGAATTTTGAAGAGATCAAATAGTAAGAGGGTTATGGGATTGGACTTGAATTTAACACCTCTAGAGAATGATGACTTGATGATGTTTGGAATGAAGTCACCCCTACCACTAACACCAATTCCTCTTTCTTTGTTCTGA 507 0.3432 MAMKRQRSNENIDLVNCLMLLSCPQQKTIENGEYECKTCNKKFLSFQALGGHRASHKRVKLSEGEELKEQAKSLSLWNKPKMHECSICGMGFSLGQALGGHMRKHRALINEGVSSINEIISKIRILKRSNSKRVMGLDLNLTPLENDDLMMFGMKSPLPLTPIPLSLF 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04150 168 Gene3D Classic Zinc Finger 31 105 - -
Trre13g04150 168 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Trre13g04150 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Trre13g04150 168 SMART c2h2final6 83 105 IPR013087 -
Trre13g04150 168 SMART c2h2final6 34 56 IPR013087 -
Trre13g04150 168 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Trre13g04150 168 SUPERFAMILY beta-beta-alpha zinc fingers 34 105 IPR036236 -
Trre13g04150 168 PANTHER ZINC FINGER PROTEIN ZAT5 10 147 - -
Trre13g04150 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 105 IPR013087 -
Trre13g04150 168 Pfam C2H2-type zinc finger 34 58 - -
Trre13g04150 168 Pfam C2H2-type zinc finger 83 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04150 Trre-Chr13 49372352 49372858 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04150 3 153 C2H2 Transcription Factor Family AT2G37430 45.238 3.62e-41 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre13g04150 zf-C2H2_6 1.3e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04150 - - aprc:113870747 211.46