Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04148 ATGCCCATGAAGAGACAAAGAGATATAGAAGGATTAGAAAGCATAGATTTAGCAAATTGTCTAATGATGCTCTCTTATCCCCAACATCAACAAAACAATAAGCCAAATCAAAAAAGTTTTGGGCAAGTGGAATATGAGTGCAAAACATGCAACAAAAAATTTTCATCATTTCAAGCACTTGGTGGCCATAGGGCTAGTCATAAAAGATCAAAATTTGAAGGGGATGAACTCATCAAAGCAAATGCATTGACTTTGGGAAATAAACCAAGAATGCATGAATGTTCCATTTGTGGTCAAGAATTTTCTTTGGGACAAGCATTAGGTGGACACATGAGAAGACATAAAGCTATCATCAATGAAGAGGTTGTTTCTTCAATGGAAAAGATTGTTAAATTACCAATTTTAAAGAGATTGAATAGTGCAAGGATTATGTGCTTGGACTTGAACTTGACACCATTAGAGAATGATTTGAAGTTATTGTTTGGAAAGATGGCTCCCAATCTTGATGTTTTAGTCTGA 519 0.3487 MPMKRQRDIEGLESIDLANCLMMLSYPQHQQNNKPNQKSFGQVEYECKTCNKKFSSFQALGGHRASHKRSKFEGDELIKANALTLGNKPRMHECSICGQEFSLGQALGGHMRRHKAIINEEVVSSMEKIVKLPILKRLNSARIMCLDLNLTPLENDLKLLFGKMAPNLDVLV 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04148 172 Gene3D Classic Zinc Finger 42 114 - -
Trre13g04148 172 SMART c2h2final6 92 114 IPR013087 -
Trre13g04148 172 SMART c2h2final6 45 67 IPR013087 -
Trre13g04148 172 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Trre13g04148 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Trre13g04148 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Trre13g04148 172 PANTHER ZINC FINGER PROTEIN ZAT5 12 156 - -
Trre13g04148 172 Pfam C2H2-type zinc finger 45 69 - -
Trre13g04148 172 Pfam C2H2-type zinc finger 92 116 - -
Trre13g04148 172 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Trre13g04148 172 SUPERFAMILY beta-beta-alpha zinc fingers 45 114 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04148 Trre-Chr13 49361597 49362115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04148 3 170 C2H2 Transcription Factor Family AT2G37430 47.541 9.30e-46 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre13g04148 zf-C2H2_6 1.8e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04148 - - gmx:100806997 240.35