Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04144 ATGGGATATTGTAACCAAAAAAGGTATGAAGCTTGGAAACCATTCATAGCTGTTGTGTTCTTGCAATTTGGATATGCTGGTATGGATGTTCTATCCAAAGCTGCACTAAACAAAGGAATGAGCAATTATGTACTCGTCGTTTATCGTCACGCCGTTGCCTTCATTGTGATTGTTCCTTTTGCAGTTATCCTAGAAAAGAAAGTAAGGCCAAAGATGACATTTTCAATCTTTATGAAGCTAGTGATTCTCAGTGTGCTAGAGCCAGTGATTGATCAAAATTTATATTTTTTGGGAATGAAGTATACAACAGCTACTTTTGCAGTTGCTATGTTCAATGTCCTTCCTGCCATTACCTTTGTGGTGGCTTGGATTCTCAAGCTTGAGAAGATAAAAATGAAAAGTGTACATAGTCAAGCAAAGATTGTTGGGACAGTAGCCACTGTTGTAGGTGCCATGCTTATGACATTGTTAAAAGGTCCAATACTTAATATTTTTGGAATACATGGAAGCAGTGCTCAAATTCAACATAATAGTGGTGCAAATCTTCAACATGCAATAAAGGGATCAATTATGATCACAATTGGTTGTTTTAGTTGTGCTTGTTTCATGATTCTCCAAGCTATAACACTTGAAACCTATCCTGCTGAGTTATCTCTTACAGCATGGATATGTCTATTGGGAACAATAGAAGGTGGAATAGTAGCTTTGATTATGGAAAGGGGTGAACCTTCAGTTTGGTCTTTGAATTGGGATACAAAACTATTGGCTGCGGTTTATAGTGGTATAGTTTGTTCAGGAATGGCCTATTACATCCAAGGAGCAGTAATGAGATATAGAGGTCCAGTTTTTGTAACAACTTTCAATCCTCTCTGCATGGTCATTGTAGCTATCATGGGCTCTTTCTTTTTGGCCGAGAAAATTTACCTCGGAAGGGTGATCGGCGCTGTCGTGATTATTTTTGGATTGTATTTAGTGGTATGGGGTAAAAGTAAAGATTATGACACACCAAATCCAAATATTGAAGATGAAATATTACCAGCTAAGCAAATTACAGAGATTAATGACAAAGAGGAGCATCCTAATCATGAGGTCATGATCACTAGCAAAAATTTTGGTGAAGGAAACAACATAGCAAGAGATGAACAAGTGTGA 1152 0.3741 MGYCNQKRYEAWKPFIAVVFLQFGYAGMDVLSKAALNKGMSNYVLVVYRHAVAFIVIVPFAVILEKKVRPKMTFSIFMKLVILSVLEPVIDQNLYFLGMKYTTATFAVAMFNVLPAITFVVAWILKLEKIKMKSVHSQAKIVGTVATVVGAMLMTLLKGPILNIFGIHGSSAQIQHNSGANLQHAIKGSIMITIGCFSCACFMILQAITLETYPAELSLTAWICLLGTIEGGIVALIMERGEPSVWSLNWDTKLLAAVYSGIVCSGMAYYIQGAVMRYRGPVFVTTFNPLCMVIVAIMGSFFLAEKIYLGRVIGAVVIIFGLYLVVWGKSKDYDTPNPNIEDEILPAKQITEINDKEEHPNHEVMITSKNFGEGNNIARDEQV 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04144 383 Pfam EamA-like transporter family 16 154 IPR000620 GO:0016020
Trre13g04144 383 Pfam EamA-like transporter family 187 326 IPR000620 GO:0016020
Trre13g04144 383 SUPERFAMILY Multidrug resistance efflux transporter EmrE 233 331 - -
Trre13g04144 383 PANTHER WAT1-RELATED PROTEIN 13 333 IPR030184 GO:0016020|GO:0022857
Trre13g04144 383 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04144 Trre-Chr13 49317011 49320359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04144 10 378 Nodulin-like Gene Family AT2G37460 63.342 4.02e-168 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04144 - - gmx:100806461 587.03